View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21287_low_12 (Length: 348)
Name: NF21287_low_12
Description: NF21287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21287_low_12 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 11 - 348
Target Start/End: Complemental strand, 3984157 - 3983820
Alignment:
| Q |
11 |
aatatccttatgtattggtatatcaatttattgtatattagttaatcattctaccaaacttctactacaataagaatattttaaactttgagtaaaaaac |
110 |
Q |
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| T |
3984157 |
aatatccttatgtattggtatattaatttattgtatattagttaatcattctaccaaacttctactacaataagaatattttaaactttgagtaaaaaac |
3984058 |
T |
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| Q |
111 |
agattatttagccttcgaaaagagtgtagtaccactttaaagtagcggcagcagcagccaagcacagataatactgcttgtaataagtgtccaaaccaag |
210 |
Q |
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| T |
3984057 |
agattatttagccttcgaaaagagtgtagtaccactttaaagtagcggcagcggcagccaagcacagataatactgcttgtaataagtgtccaaaccaag |
3983958 |
T |
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| Q |
211 |
tgctgaaggatccttggctgctaggttttttattaagatagctccctgaagcacaaaatttagtgcatttctgaggaaaaaatttgctatagaatcctaa |
310 |
Q |
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| T |
3983957 |
tgctgaaggatccttggctgctaggttttttattaagatagctccctgaagcacaaaatttagtgcatttctgaggaaaaaatttgctatagaatcctaa |
3983858 |
T |
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| Q |
311 |
accttgaaatcaattgaaatgaaagataaaaagtatgt |
348 |
Q |
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| T |
3983857 |
accttgaaatcaattgaaatgaaagataaaaagtatgt |
3983820 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 18 - 61
Target Start/End: Original strand, 24089514 - 24089557
Alignment:
| Q |
18 |
ttatgtattggtatatcaatttattgtatattagttaatcattc |
61 |
Q |
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| T |
24089514 |
ttatttattggtatatcaatttattgtatattaattactcattc |
24089557 |
T |
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