View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21287_low_16 (Length: 297)
Name: NF21287_low_16
Description: NF21287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21287_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 13 - 279
Target Start/End: Original strand, 44000408 - 44000678
Alignment:
| Q |
13 |
tgagacggagggagtaacaagcaacgatctttaaacattacctgatgcagcatccacaaactttccatttataagatgctgtgtataatttattgaaact |
112 |
Q |
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| T |
44000408 |
tgagacggagggagtaacaagcaacgatctttaaacattacctgatgcagcatccacaaactttccatttataagatgctgtgtataatttattgaaact |
44000507 |
T |
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| Q |
113 |
tgtggagtaatcaattcctgaacagctgcagcagtgctaaatctgtttgtgtttatcaacccttcagattttcttcctgaggtgaaacaaaacataaagc |
212 |
Q |
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| T |
44000508 |
tgtggagtaatcaattcctgaacagctgcagcagtgctaaatctgtttgtgtttatcaacccttcagattttcttcctgaggtgaaacaaaacataaagc |
44000607 |
T |
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| Q |
213 |
agaaatcttattccatgcattac----nnnnnnngtatatccacacacagttacaggataaggaattgaat |
279 |
Q |
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| T |
44000608 |
agaaatcttattccatgcattacaaaaaaaaaaagtatatccacacacagttacaggataaggaattgaat |
44000678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 141; Significance: 6e-74; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 27 - 234
Target Start/End: Complemental strand, 5572672 - 5572465
Alignment:
| Q |
27 |
taacaagcaa-cgatctttaaacattacctgatgcagcatccacaaactttccatttataagatgctgtgtataatttattgaaacttgtggagtaatca |
125 |
Q |
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|||||||||| | ||||||| ||||||||||||||| |||||||||| ||||||||||||||||| |||||||| || |||||||||| ||||||||||| |
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| T |
5572672 |
taacaagcaaacaatctttatacattacctgatgcatcatccacaaattttccatttataagatgttgtgtatagttcattgaaacttatggagtaatca |
5572573 |
T |
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| Q |
126 |
attcctgaacagctgcagcagtgctaaatctgtttgtgtttatcaacccttcagattttcttcctgaggtgaaacaaaacataaagcagaaatcttattc |
225 |
Q |
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| T |
5572572 |
attcctcaacagctgtagcattgctaaatctgtttgtgtttatcaacccttcag-ttttcttcctgaggtaaaacaaaacataaaccagaaatcttattc |
5572474 |
T |
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| Q |
226 |
catgcatta |
234 |
Q |
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||||||||| |
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| T |
5572473 |
catgcatta |
5572465 |
T |
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