View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21287_low_18 (Length: 285)

Name: NF21287_low_18
Description: NF21287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21287_low_18
NF21287_low_18
[»] chr1 (5 HSPs)
chr1 (7-268)||(11630961-11631222)
chr1 (9-266)||(11639725-11639982)
chr1 (7-266)||(11675419-11675678)
chr1 (64-266)||(11683060-11683262)
chr1 (16-159)||(11682915-11683058)


Alignment Details
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 7 - 268
Target Start/End: Complemental strand, 11631222 - 11630961
Alignment:
Q  7 gaatcataggactctttagccacttccaacgtgaaggatgtaacagagccgtcctttgttgaaatactttgaatttcccgaaaaagttttccaattacat 106  Q
    ||||||||||||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||| |||||||    
T  11631222 gaatcataggactctttagccacttccaatgtgaaagatgtaatagagccgtcctttgttgaaataccttgaatttccctaaaaagttttcctattacat 11631123  T
Q  107 tctttgatttgcaggtaggtttgtcaggcttctccatgaaatctggatattctgtggggaaaagacgacgaggtatttctgctgggatacctgtttttgg 206  Q
    ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||    
T  11631122 tctttgatttgtagataggtttgtcaggcttctccatgaaatctggatattctgtggggaaaagaccacgaggtatttctgctgggataccggtttttgg 11631023  T
Q  207 aaagtcaactgctgttgagaatagctttgcaagctcaacacatggatcagccattgcttttc 268  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11631022 aaagtcaactgctgttgagaatagctttgcaagctcaacacatggatcagccattgcttttc 11630961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 9 - 266
Target Start/End: Complemental strand, 11639982 - 11639725
Alignment:
Q  9 atcataggactctttagccacttccaacgtgaaggatgtaacagagccgtcctttgttgaaatactttgaatttcccgaaaaagttttccaattacattc 108  Q
    |||||| |||| ||||||||||||||  |||||||||||||  |||||||||||||||||||| | ||||||||||| ||| |||||||| ||||||||     
T  11639982 atcatatgactttttagccacttccagtgtgaaggatgtaatggagccgtcctttgttgaaattccttgaatttccctaaacagttttcctattacatta 11639883  T
Q  109 tttgatttgcaggtaggtttgtcaggcttctccatgaaatctggatattctgtggggaaaagacgacgaggtatttctgctgggatacctgtttttggaa 208  Q
    | ||||||| | || | |||||||| ||||||||||||||||||||||||| ||| ||||||   |||||||||  | ||||||||||| || |||||||    
T  11639882 tctgatttgtatgttgttttgtcagccttctccatgaaatctggatattctttggcgaaaagttcacgaggtataacggctgggataccagtctttggaa 11639783  T
Q  209 agtcaactgctgttgagaatagctttgcaagctcaacacatggatcagccattgcttt 266  Q
    ||||||||||| |||||||||||||||||||||| | |||||| |||| |||||||||    
T  11639782 agtcaactgctattgagaatagctttgcaagctcgatacatggctcagacattgcttt 11639725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 7 - 266
Target Start/End: Original strand, 11675419 - 11675678
Alignment:
Q  7 gaatcataggactctttagccacttccaacgtgaaggatgtaacagagccgtcctttgttgaaatactttgaatttcccgaaaaagttttccaattacat 106  Q
    |||||||| ||||| ||||||||||| |  || |||||||||| ||| ||  |||  |||||||||| ||||||||||| |||||||||||| |||||||    
T  11675419 gaatcatatgactccttagccacttcaagtgtaaaggatgtaagagaaccaccctcagttgaaataccttgaatttccctaaaaagttttcctattacat 11675518  T
Q  107 tctttgatttgcaggtaggtttgtcaggcttctccatgaaatctggatattctgtggggaaaagacgacgaggtatttctgctgggatacctgtttttgg 206  Q
    ||||||||||| |||| | |||||||||||| |||||||| |||||||||||| ||| ||||||| || | |||||  ||||||||||||| ||||||||    
T  11675519 tctttgatttgtaggtggttttgtcaggcttttccatgaagtctggatattctttggcgaaaagatgagggggtataactgctgggataccggtttttgg 11675618  T
Q  207 aaagtcaactgctgttgagaatagctttgcaagctcaacacatggatcagccattgcttt 266  Q
    ||| ||||||||| ||||||||||||||||||| |||| |||||| |||| |||||||||    
T  11675619 aaaatcaactgctattgagaatagctttgcaagttcaatacatggctcagacattgcttt 11675678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 64 - 266
Target Start/End: Original strand, 11683060 - 11683262
Alignment:
Q  64 gttgaaatactttgaatttcccgaaaaagttttccaattacattctttgatttgcaggtaggtttgtcaggcttctccatgaaatctggatattctgtgg 163  Q
    |||||||||| ||||||||||| |||||||||||| |||||||||||||||||| |||| | |||||||||||| |||||||| |||||||||||| |||    
T  11683060 gttgaaataccttgaatttccctaaaaagttttcctattacattctttgatttgtaggtggttttgtcaggcttttccatgaagtctggatattctttgg 11683159  T
Q  164 ggaaaagacgacgaggtatttctgctgggatacctgtttttggaaagtcaactgctgttgagaatagctttgcaagctcaacacatggatcagccattgc 263  Q
      |||||| || |||||||  ||||||||||||| ||||||||||| |||||||||  |||||||||||||||||| |||| |||||| |||||||||||    
T  11683160 caaaaagatgaggaggtataactgctgggataccggtttttggaaaatcaactgctactgagaatagctttgcaagttcaatacatggctcagccattgc 11683259  T
Q  264 ttt 266  Q
    |||    
T  11683260 ttt 11683262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 16 - 159
Target Start/End: Original strand, 11682915 - 11683058
Alignment:
Q  16 gactctttagccacttccaacgtgaaggatgtaacagagccgtcctttgttgaaatactttgaatttcccgaaaaagttttccaattacattctttgatt 115  Q
    ||||||||||||||||| |  ||||||||||||| ||| ||||| ||||||||||||| ||||||||||| |||||||||||| ||||||||||||||||    
T  11682915 gactctttagccacttcaagtgtgaaggatgtaatagaaccgtcatttgttgaaataccttgaatttccctaaaaagttttcctattacattctttgatt 11683014  T
Q  116 tgcaggtaggtttgtcaggcttctccatgaaatctggatattct 159  Q
    || |||| | |||||||||||| |||||||| ||||||||||||    
T  11683015 tgtaggtggttttgtcaggcttttccatgaagtctggatattct 11683058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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