View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21287_low_2 (Length: 583)
Name: NF21287_low_2
Description: NF21287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21287_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 190; Significance: 1e-103; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 33 - 329
Target Start/End: Original strand, 41781826 - 41782118
Alignment:
| Q |
33 |
ttatttgagtatgaaatctctctagttctcnnnnnnnttcatatcagttattgatattagttttgaactctaaannnnnnnnnnnnnnnctagcctctta |
132 |
Q |
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| T |
41781826 |
ttatttgagtaagatatctctctagttctcaaaaaaattcatatcatttattgatattagttttgaactctaaattttttgacttttttctagcctctta |
41781925 |
T |
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| Q |
133 |
attgctaaaactaacaatgcaagaggctaatatgaaaataaaaattcgaatacaaagtcatcgcaatgttaatatgttaatttacataaaagtgtgaatg |
232 |
Q |
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| T |
41781926 |
attgttaaaactaacaatgcaagaggctaatatgaaaataaaaattcgaatacaaagtcatcgcaatgttaatatgttaatttacataaaagtgtgaatg |
41782025 |
T |
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| Q |
233 |
tgacatgcatgttgaagttcttcatgagaccatggggaataattatcacattaaactgttgatatggccatttggtatataaatgtattagggtgtc |
329 |
Q |
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| T |
41782026 |
tga----catgttgaagttcttcatgagaccatgggaaataattgtcacattaaactgttgatatggccatttggtatataaatgtattagggtgtc |
41782118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 70 - 330
Target Start/End: Complemental strand, 40519787 - 40519525
Alignment:
| Q |
70 |
ttcatatcagttattgatattagttttgaactctaaannnnnnnnnnnnnnnctagcctcttaattgctaaaactaacaatgcaagaggctaatatga-- |
167 |
Q |
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| T |
40519787 |
ttcatatcagttattgatattagttttgagctctaaaaattttaacttttttctagcctcttaattgttaaaactaacaatgca-gaggataatataaca |
40519689 |
T |
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| Q |
168 |
-aaataaaaattcgaatacaaagtcatcgcaatgttaat----atgttaatttacataaaagtgtgaatgtgacatgcatgttgaagttcttcatgagac |
262 |
Q |
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| T |
40519688 |
aaaaaaaaaatcccaatacaaagtcatcacaatgttaattaatatgttaatttacataaaagtgtgaatgtgacatg----ttgaagttgttcatgagac |
40519593 |
T |
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| Q |
263 |
catggggaataattatcacattaaactgttgatatggccatttggtatataaatgtattagggtgtca |
330 |
Q |
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| T |
40519592 |
catggagaataattgtcacattaaattgttgatgtgaccatctggtatataaatgtaatagggtgtca |
40519525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 196 - 236
Target Start/End: Complemental strand, 40510685 - 40510645
Alignment:
| Q |
196 |
caatgttaatatgttaatttacataaaagtgtgaatgtgac |
236 |
Q |
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| T |
40510685 |
caatgttaatgtgttaaattacataaaagtgtgaatgtgac |
40510645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 256 - 321
Target Start/End: Complemental strand, 40510629 - 40510564
Alignment:
| Q |
256 |
atgagaccatggggaataattatcacattaaactgttgatatggccatttggtatataaatgtatt |
321 |
Q |
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| T |
40510629 |
atgagaccatgggaaataattgtcacattaaattgttgatgtgaccatcgggtagataagtgtatt |
40510564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 112; Significance: 2e-56; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 122 - 330
Target Start/End: Complemental strand, 18163764 - 18163561
Alignment:
| Q |
122 |
ctagcctcttaattgctaaaactaacaatgcaagaggctaatatgaaaataaaaattcgaatacaaagtcatcgcaatgttaatatgttaatttacataa |
221 |
Q |
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| T |
18163764 |
ctagcctcttagttgttaaaactaacaatgca-gaggctaatatgaacaaaaaagtcctaaaacaaagtcatcaaaatgttaatatgttaatttacataa |
18163666 |
T |
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| Q |
222 |
aagtgtgaatgtgacatgcatgttgaagttcttcatgagaccatggggaataattatcacattaaactgttgatatggccatttggtatataaatgtatt |
321 |
Q |
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| T |
18163665 |
aagtgtgaatgtgacatg----ttgaagttgttcatgagaccatgaggaatcattgtcacattaaattgttgatgtggccatctggtatataaatttatt |
18163570 |
T |
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| Q |
322 |
agggtgtca |
330 |
Q |
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| T |
18163569 |
agggtgtca |
18163561 |
T |
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