View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21287_low_20 (Length: 273)
Name: NF21287_low_20
Description: NF21287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21287_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 13 - 255
Target Start/End: Original strand, 3650739 - 3650980
Alignment:
| Q |
13 |
aatatcttaccaagtaccaacatgtgcacaatcaacagaaagcaagaaacattatcattttcaagccccaaaagaccaaaaacgttcataaactcagaca |
112 |
Q |
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| T |
3650739 |
aatatcttaccaagtaccaacatgtgcacaatcaatagaaagcaagaaacattataattttcaagccccaaaagaccaaaaacgttcataaactcagaca |
3650838 |
T |
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| Q |
113 |
aaatataatataaaacctttttatagctaaaaaactaagcaggacgtagttgtagtccaaactactttaacggtttaattaattacacctgctatgatct |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| |
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| T |
3650839 |
aaatataatataaaacctttttatagctaaaaaactaagcaggacgtagttgtagtccaaactactttaacggtttaactaattatacctgctatgatct |
3650938 |
T |
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| Q |
213 |
gtgacnnnnnnnnggacctaactagtggattgaacggtactta |
255 |
Q |
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||||| |||||||||||||||||||||||||||||| |
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| T |
3650939 |
gtgac-aaaaaaaggacctaactagtggattgaacggtactta |
3650980 |
T |
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