View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21287_low_24 (Length: 251)
Name: NF21287_low_24
Description: NF21287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21287_low_24 |
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Alignment Details
Target: chr4 (Bit Score: 136; Significance: 5e-71; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 20 - 231
Target Start/End: Original strand, 5035540 - 5035751
Alignment:
| Q |
20 |
gagagtgatattaagtgatgtaatattagggaacctttcaaagagacgattaaggaaagggagtgtagctttggagattttgaccaagaatcgaaggcga |
119 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| ||| || | ||||||||||||||||||||||| || |
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| T |
5035540 |
gagagtgatattgagtgatgtaatattagggaacctttcaaagagacgactaaggaaagggattgttgcctcagagattttgaccaagaatcgaagacgg |
5035639 |
T |
|
| Q |
120 |
ttggtgatggacagaaactgttttgaaacgagggagagagacctgaaactactgttggtgatggacagatcttgttttgagacgtggtagagagacctta |
219 |
Q |
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||||||||||| ||||||||||||||||||| ||| |||||||||||||||||||| ||||| | || |||||||| ||||||||| ||||||||| ||| |
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| T |
5035640 |
ttggtgatggagagaaactgttttgaaacgaaggaaagagacctgaaactactgtttgtgattggcatatcttgttctgagacgtgatagagagacttta |
5035739 |
T |
|
| Q |
220 |
ttctgcgggggt |
231 |
Q |
| |
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|||||||||||| |
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| T |
5035740 |
ttctgcgggggt |
5035751 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 19 - 226
Target Start/End: Original strand, 2525674 - 2525881
Alignment:
| Q |
19 |
agagagtgatattaagtgatgtaatattagggaacctttcaaagagacgattaaggaaagggagtgtagctttggagattttgaccaagaatcgaaggcg |
118 |
Q |
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||||||||||||| ||||||| ||| ||||||||||||||||||||||||||||| ||||||| || || ||||||||| |||||||||||||||| | |
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| T |
2525674 |
agagagtgatattgagtgatgcaatgttagggaacctttcaaagagacgattaagaaaagggatagttgcattggagattgtgaccaagaatcgaagact |
2525773 |
T |
|
| Q |
119 |
attggtgatggacagaaactgttttgaaacgagggagagagacctgaaactactgttggtgatggacagatcttgttttgagacgtggtagagagacctt |
218 |
Q |
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|||||||||||||||||||||||||| |||||||||||||| |||||||||| ||||||||||| ||| ||||||||||||||||||||||| | | |
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| T |
2525774 |
gttggtgatggacagaaactgttttgagacgagggagagagatctgaaactaccgttggtgatgggtagagattgttttgagacgtggtagagagttcct |
2525873 |
T |
|
| Q |
219 |
attctgcg |
226 |
Q |
| |
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|||||||| |
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| T |
2525874 |
attctgcg |
2525881 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 19 - 169
Target Start/End: Original strand, 2491045 - 2491195
Alignment:
| Q |
19 |
agagagtgatattaagtgatgtaatattagggaacctttcaaagagacgattaaggaaagggagtgtagctttggagattttgaccaagaatcgaaggcg |
118 |
Q |
| |
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|||| |||||||| | ||||||||| ||||||||||||||||||||||||||||||||||||| ||| || | ||||||| ||||| | ||||| || || |
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| T |
2491045 |
agagggtgatattgattgatgtaatgttagggaacctttcaaagagacgattaaggaaagggattgttgcatcggagattgtgaccgaaaatcggagacg |
2491144 |
T |
|
| Q |
119 |
attggtgatggacagaaactgttttgaaacgagggagagagacctgaaact |
169 |
Q |
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|| ||||||||||||||||||||||| ||||| ||||||||||||||||| |
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|
| T |
2491145 |
gtttgtgatggacagaaactgttttgagacgagtgagagagacctgaaact |
2491195 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 19 - 168
Target Start/End: Original strand, 2486224 - 2486373
Alignment:
| Q |
19 |
agagagtgatattaagtgatgtaatattagggaacctttcaaagagacgattaaggaaagggagtgtagctttggagattttgaccaagaatcgaaggcg |
118 |
Q |
| |
|
||||||||||||| | ||||||| ||||||||||| | ||||||||||| ||||||||||| ||| | ||||||| ||||| ||||||| || || |
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| T |
2486224 |
agagagtgatattgtgggatgtaacattagggaacccataaaagagacgatgaaggaaagggattgttttctcggagattgtgaccgagaatcggagacg |
2486323 |
T |
|
| Q |
119 |
attggtgatggacagaaactgttttgaaacgagggagagagacctgaaac |
168 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||| |||| |
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| T |
2486324 |
gttggtgatggacagaaactgttttgagacgagggagagagacctaaaac |
2486373 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 92 - 164
Target Start/End: Original strand, 2536575 - 2536647
Alignment:
| Q |
92 |
ggagattttgaccaagaatcgaaggcgattggtgatggacagaaactgttttgaaacgagggagagagacctg |
164 |
Q |
| |
|
|||||||||||||||||||||||| | |||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
2536575 |
ggagattttgaccaagaatcgaagaaggttggtgatggacagaaactgttttgaaatgagggagagagacctg |
2536647 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 2534232 - 2534294
Alignment:
| Q |
19 |
agagagtgatattaagtgatgtaatattagggaacctttcaaagagacgattaaggaaaggga |
81 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||| || ||||||||||||| |
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| T |
2534232 |
agagagtgatattgagtgatgtaatattagggaacctttcaaagaggcggttaaggaaaggga |
2534294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 19 - 148
Target Start/End: Original strand, 2519150 - 2519279
Alignment:
| Q |
19 |
agagagtgatattaagtgatgtaatattagggaacctttcaaagagacgattaaggaaagggagtgtagctttggagattttgaccaagaatcgaaggcg |
118 |
Q |
| |
|
|||||||||| || |||||||||| || |||||||| ||||||||||||| ||||||||||| ||| | |||||| |||| || |||||| || |
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| T |
2519150 |
agagagtgatgttgagtgatgtaacgttggggaacctatcaaagagacgatgaaggaaagggattgtttgatctgagattgtgactgaggatcgaaaacg |
2519249 |
T |
|
| Q |
119 |
attggtgatggacagaaactgttttgaaac |
148 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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| T |
2519250 |
gttggtgatggacagaaactgttttgaaac |
2519279 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 19 - 169
Target Start/End: Original strand, 2467447 - 2467597
Alignment:
| Q |
19 |
agagagtgatattaagtgatgtaatattagggaacctttcaaagagacgattaaggaaagggagtgtagctttggagattttgaccaagaatcgaaggcg |
118 |
Q |
| |
|
|||||||||| | || |||| | ||||| |||||||||||||||||||||| ||| ||||||| ||| | | ||| || ||| |||||||||| | |
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| T |
2467447 |
agagagtgatgtcaattgatctgatattggggaacctttcaaagagacgatgaagtaaagggattgttccgtcggaaatcgagacggagaatcgaagact |
2467546 |
T |
|
| Q |
119 |
attggtgatggacagaaactgttttgaaacgagggagagagacctgaaact |
169 |
Q |
| |
|
||||| ||||||| |||||||||||| |||| |||||||||| ||||||| |
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|
| T |
2467547 |
gttggtaatggacaaaaactgttttgagacgacggagagagacttgaaact |
2467597 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 169
Target Start/End: Complemental strand, 5106380 - 5106306
Alignment:
| Q |
95 |
gattttgaccaagaatcgaaggcgattggtgatggacagaaactgttttgaaacgagggagagagacctgaaact |
169 |
Q |
| |
|
|||| ||||| |||||||| | || ||||||||||||| |||||||||||| ||| ||||||||| ||||||| |
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| T |
5106380 |
gattgtgaccgagaatcgaggacggttggtgatggacaaaaactgttttgagacggcagagagagacttgaaact |
5106306 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 161
Target Start/End: Complemental strand, 44575227 - 44575183
Alignment:
| Q |
117 |
cgattggtgatggacagaaactgttttgaaacgagggagagagac |
161 |
Q |
| |
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||||||||||| || |||||||||||||| |||| |||||||||| |
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|
| T |
44575227 |
cgattggtgattgagagaaactgttttgagacgatggagagagac |
44575183 |
T |
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