View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21287_low_29 (Length: 241)
Name: NF21287_low_29
Description: NF21287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21287_low_29 |
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Alignment Details
Target: chr2 (Bit Score: 215; Significance: 1e-118; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 43174445 - 43174219
Alignment:
| Q |
1 |
cactgcaccagtcaaattgttatctgacaaatccctaatattggagcaaaatgtttttactcaactttaagagtatgcatcatttttgtgatcaacttac |
100 |
Q |
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| T |
43174445 |
cactgcaccagtcaaattgttatctgacaaatccctaatattggaacaaaatgtttttactcaactttaagagtatgcttcattttagtgatcaacttac |
43174346 |
T |
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| Q |
101 |
tagcttgctatttgtttttcgtgtacataatagattcaagaactctctattgacttcagattggatatcccagaagctatagttccaattaaaccgctgg |
200 |
Q |
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| T |
43174345 |
tagcttgctatttgtttttcgtgtacataatagattcaagaactctctattgacttcagattggatatcccagaagctatagttccaattaaaccgctgg |
43174246 |
T |
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| Q |
201 |
aagttaagttcctgaagcatgattatg |
227 |
Q |
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| T |
43174245 |
aagttaagttcctgaagcatgattatg |
43174219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 8 - 227
Target Start/End: Original strand, 43223032 - 43223259
Alignment:
| Q |
8 |
ccagtcaaattgttatctgacaaatccctaatattggagcaaaatgtttttactcaactttaagagtatgcatcatttttgtgatcaacttactagcttg |
107 |
Q |
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| T |
43223032 |
ccagtcaaattgttatttgacaaatccctaaaattggaacaaaatgtttttactcaactttaagagtatgcttcatttttgggatcaacttattagcttg |
43223131 |
T |
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| Q |
108 |
ctatttgtttttcgtgtacataatagattcaagaact--------ctctattgacttcagattggatatcccagaagctatagttccaattaaaccgctg |
199 |
Q |
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| T |
43223132 |
ctatttgttttttgtgtacataatagattcaagaacttacaaatattctattgacttcagattggatatcccagaagctatagttccaattaaaccgctg |
43223231 |
T |
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| Q |
200 |
gaagttaagttcctgaagcatgattatg |
227 |
Q |
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| T |
43223232 |
gaagttaagttcctaaagcatgattatg |
43223259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 146 - 227
Target Start/End: Complemental strand, 43164594 - 43164513
Alignment:
| Q |
146 |
tctattgacttcagattggatatcccagaagctatagttccaattaaaccgctggaagttaagttcctgaagcatgattatg |
227 |
Q |
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| T |
43164594 |
tctatggacttcagattggatatgccagcagctatagttccaattaaaccgctggaagttaagttcctaaagcatggttatg |
43164513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 5 - 69
Target Start/End: Complemental strand, 43164734 - 43164670
Alignment:
| Q |
5 |
gcaccagtcaaattgttatctgacaaatccctaatattggagcaaaatgtttttactcaacttta |
69 |
Q |
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| T |
43164734 |
gcaccagtcaaattgttatttgacaaatccctaaaattggaacaaaatgtttttactcaacttta |
43164670 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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