View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21287_low_3 (Length: 550)
Name: NF21287_low_3
Description: NF21287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21287_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 385; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 18 - 455
Target Start/End: Original strand, 10747617 - 10748055
Alignment:
| Q |
18 |
catcatagattctgtttaaattcatgtttggttatttttgttgtagcattgctagttgtttcaagagttgagtgtattagagttagagacttcaaaagct |
117 |
Q |
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| T |
10747617 |
catcatagattctgtttaaattcatgtttggttatttttgttgtagcattgttagttgtttcaagagttgagtgtattaaagttagagacttcaaaagct |
10747716 |
T |
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| Q |
118 |
tatttgaaaatcaattaccaaaagggcctgttccaccatctgcaccttcccaatgccacaataagcttagccctttcaaagataacaaagtttcattccc |
217 |
Q |
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| T |
10747717 |
tatttgaaaatcaattaccaaaagggcctgttccaccatctgcaccttcccaatgccacaataagcttagccctttcaaagataacaaagtttcattccc |
10747816 |
T |
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| Q |
218 |
agatgattactatattgcttgtccatagcatgtgaatgaagacatagtcgtgtatatggatctggttttctgtcttttctttctcagtaaatcgggtatc |
317 |
Q |
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| T |
10747817 |
agatgattactatattgcttgtccatagcatgtgaatgaagacatagtcgtgtatatggatctagttttctttcttttctttctcactaaatcgggtatc |
10747916 |
T |
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| Q |
318 |
ttccacacgtaactacaaagactatttcatagatcaggg--tatgactataatgaacgacaaagctctttcctttcgagagttttaatgttgatgcatat |
415 |
Q |
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| T |
10747917 |
ttccacatgtaactacaaagactacttcatagatcagggtttatgactataatgaacgacaaagctctttccttt-tagagttttaatgttgattcatat |
10748015 |
T |
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| Q |
416 |
ccagagttgaatagaaacagaagacctctagttaagtcag |
455 |
Q |
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| T |
10748016 |
ccagagttgaatagaaacagaagacctctagttaagtcag |
10748055 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 471 - 540
Target Start/End: Original strand, 10748046 - 10748115
Alignment:
| Q |
471 |
gttaagtcagaagcgacgagaaccatttcacacaaccgttcttttgtaattgtcattcttttttgtctct |
540 |
Q |
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| T |
10748046 |
gttaagtcagaagcgacgagaaccatttcatacaaccgttcttttgtaattgtcattcttttttgtctct |
10748115 |
T |
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