View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21287_low_33 (Length: 232)
Name: NF21287_low_33
Description: NF21287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21287_low_33 |
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Alignment Details
Target: chr8 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 41 - 214
Target Start/End: Original strand, 2381702 - 2381875
Alignment:
| Q |
41 |
catataaattgcaatatctctgccaactgagttaagctcgcggtgatagattacgatgaactatttattcgtaatccgaactatatactcatgttaagtt |
140 |
Q |
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| T |
2381702 |
catataaaatgcaatatctctgccaactgagctaaactcgcggagatagattacgatgaactatttattcgtaatccgaactatatactcctgttaagtt |
2381801 |
T |
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| Q |
141 |
tacataattttcaggtgacattaatgatattttcttaaaacaattaatgatattttgtcgtaatatgattaatg |
214 |
Q |
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| T |
2381802 |
tacctaattttcaggtgacattaatgatattttcctaaaacaattaatgatattttttcgtaatatgattaatg |
2381875 |
T |
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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 33 - 88
Target Start/End: Complemental strand, 25076818 - 25076763
Alignment:
| Q |
33 |
ggtctttacatataaattgcaatatctctgccaactgagttaagctcgcggtgata |
88 |
Q |
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| T |
25076818 |
ggtctttgcatataaaatgcaatatctttaccaactgagttaagctcgcggggata |
25076763 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 79
Target Start/End: Complemental strand, 40931181 - 40931141
Alignment:
| Q |
39 |
tacatataaattgcaatatctctgccaactgagttaagctc |
79 |
Q |
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| T |
40931181 |
tacatataatatgcaatatctctgccaaatgagttaagctc |
40931141 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 79
Target Start/End: Original strand, 21962132 - 21962170
Alignment:
| Q |
41 |
catataaattgcaatatctctgccaactgagttaagctc |
79 |
Q |
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| T |
21962132 |
catataatttgcaatatccctgccaactgagttaagctc |
21962170 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 50 - 79
Target Start/End: Original strand, 47255118 - 47255147
Alignment:
| Q |
50 |
tgcaatatctctgccaactgagttaagctc |
79 |
Q |
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| T |
47255118 |
tgcaatatctctgccaactgagttaagctc |
47255147 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 79
Target Start/End: Original strand, 12894555 - 12894595
Alignment:
| Q |
39 |
tacatataaattgcaatatctctgccaactgagttaagctc |
79 |
Q |
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|||||||||| ||||||||| || ||||||||||||||||| |
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| T |
12894555 |
tacatataaaatgcaatatccctaccaactgagttaagctc |
12894595 |
T |
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