View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21287_low_35 (Length: 225)
Name: NF21287_low_35
Description: NF21287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21287_low_35 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 179; Significance: 9e-97; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 15 - 209
Target Start/End: Original strand, 1423997 - 1424191
Alignment:
| Q |
15 |
caaaggatagcaccaattgtcgagaacagcacaagcagtagcaacagcaataacagttccaacagcattacactcttaagtggctacaatcacgtgaagt |
114 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
1423997 |
caaaagatagcaccaattgtcgagaacagcacaagcagtagcaacagcaataacagttccaacagcattacactcttaagtggctacaatcacgtaaagt |
1424096 |
T |
|
| Q |
115 |
tccctgtccgtgcacggagcaagtctcgtagtaagcctcaccttggcatttctgatacctggaaccatcaattcgcatggaaacaacctaataac |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
1424097 |
tccctgtccgtgcacggagcaagtctcgtagtaagcctcgccttggcatttctgatacctggaaccatcaattcgcgtggaaacaacctaataac |
1424191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 143 - 199
Target Start/End: Original strand, 1424431 - 1424487
Alignment:
| Q |
143 |
tagtaagcctcaccttggcatttctgatacctggaaccatcaattcgcatggaaaca |
199 |
Q |
| |
|
||||||||||||||||||||||||||| || ||||||| ||||||| | |||||||| |
|
|
| T |
1424431 |
tagtaagcctcaccttggcatttctgacacatggaaccgtcaattcacgtggaaaca |
1424487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 117; Significance: 9e-60; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 34 - 202
Target Start/End: Complemental strand, 17602046 - 17601878
Alignment:
| Q |
34 |
tcgagaacagcacaagcagtagcaacagcaataacagttccaacagcattacactcttaagtggctacaatcacgtgaagttccctgtccgtgcacggag |
133 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
17602046 |
tcgagaacagcacaagcagcagcaacagcaataacagttccaacagcattaccctcttaagtggctacaatcacatgaagttccctgtccgtgcacggag |
17601947 |
T |
|
| Q |
134 |
caagtctcgtagtaagcctcaccttggcatttctgatacctggaaccatcaattcgcatggaaacaacc |
202 |
Q |
| |
|
|||||||||||| ||||||| ||||||| || ||||| ||| |||| |||||| ||||||||||||| |
|
|
| T |
17601946 |
caagtctcgtagcaagcctcgccttggccttgctgatgcctcaaacctgcaattcccatggaaacaacc |
17601878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University