View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21287_low_5 (Length: 546)
Name: NF21287_low_5
Description: NF21287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21287_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 19 - 535
Target Start/End: Complemental strand, 50705721 - 50705201
Alignment:
| Q |
19 |
gagttgtcttcctccttgtatgggattttatttttcttgattggact--aaaatcctccaatatgggaaaactagaaacatgcattgcaggagggttttg |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
50705721 |
gagttgtcttcctccttgtatgggattttatttttcttcattggactgtaaaatcctccaatatgggaaaactagaaacatgcattgcaggaaggttttg |
50705622 |
T |
|
| Q |
117 |
gatgattttgaataaatttccaaattcattaattctatttattatctnnnnnnnnnnnnnnnnnnntactcacaagtactaccagaaaaagtgagggatt |
216 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||| |||||| ||||||| ||||||||||||||||||| |
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| T |
50705621 |
gatgattttgaatcaatttccaaattcattaattctatttattataatctcaacaacaacaaaaaatactcataagtactcccagaaaaagtgagggatt |
50705522 |
T |
|
| Q |
217 |
ctcttatctttcccttcacccccctttcctccaactcttaccc--tcctaactgacataatggcaaatggtattacagacgttattattttacaacaatg |
314 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
50705521 |
ctcttatctttcccttcaccccactttcctccaactcttaccccctcctaactgacataatggcaaatggtattgcagacgttattattttacaacaatg |
50705422 |
T |
|
| Q |
315 |
acaaaaagaatgaggttgcataactaataaaagacatgccatccactctgccctcttctcacctatattctatacaacttccaactttcaaaaattgcag |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50705421 |
acaaaaagaatgaggttgcataactaataaaagacatgccatccactctgccctcttctcacctatattctatacaacttccaactttcaaaaattgcag |
50705322 |
T |
|
| Q |
415 |
caactagcctattagaaagggttccttcttcctttagtagannnnnnngtgggcggtggtcatggaggagtgtgaagacttacatctttctttgaattac |
514 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50705321 |
caactagcctattagaaagggttccttcttcctttagtagatttttttgtgggcggtggtcatggaggagtgtgaagacttacatctttctttgaattac |
50705222 |
T |
|
| Q |
515 |
ttgacttgacaaaccaagtat |
535 |
Q |
| |
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||||||||||||||||||||| |
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| T |
50705221 |
ttgacttgacaaaccaagtat |
50705201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 32 - 136
Target Start/End: Complemental strand, 26637461 - 26637358
Alignment:
| Q |
32 |
ccttgtatgggattttatttttcttgattggactaaaatcctccaatatgggaaaactagaaacatgcattgcaggagggttttggatgattttgaataa |
131 |
Q |
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||||| ||| ||||||||||||||| |||||||||||| ||||||||||||| ||||| ||| |||||||| | ||||||||||| ||| | |||||| |
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| T |
26637461 |
ccttgcatgagattttatttttcttcattggactaaaaccctccaatatggg-gaactaaaaagatgcattggggaagggttttggaggatatcgaataa |
26637363 |
T |
|
| Q |
132 |
atttc |
136 |
Q |
| |
|
||||| |
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| T |
26637362 |
atttc |
26637358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 32 - 155
Target Start/End: Complemental strand, 26629922 - 26629800
Alignment:
| Q |
32 |
ccttgtatgggattttatttttcttgattggactaaaatcctccaatatgggaaaactagaaacatgcattgcaggagggttttggatgattttgaataa |
131 |
Q |
| |
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||||| ||| ||||||||| ||||| |||| ||||||| ||||| ||||||| ||||| ||| |||||||| | ||||||||||| ||| | ||||| |
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| T |
26629922 |
ccttgcatgagattttattgttcttcattgaactaaaaccctcccatatgggggaactaaaaaaatgcattggggaagggttttggaggatatcaaataa |
26629823 |
T |
|
| Q |
132 |
atttccaaattcattaattctatt |
155 |
Q |
| |
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|||| ||||||||||| ||||||| |
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| T |
26629822 |
attt-caaattcattacttctatt |
26629800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 33 - 85
Target Start/End: Original strand, 33109913 - 33109965
Alignment:
| Q |
33 |
cttgtatgggattttatttttcttgattggactaaaatcctccaatatgggaa |
85 |
Q |
| |
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|||| ||| ||||||||||||||| |||||||||||| ||||||||| ||||| |
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| T |
33109913 |
cttgaatgagattttatttttcttcattggactaaaaccctccaataggggaa |
33109965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 43 - 86
Target Start/End: Complemental strand, 42198141 - 42198098
Alignment:
| Q |
43 |
attttatttttcttgattggactaaaatcctccaatatgggaaa |
86 |
Q |
| |
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||||| |||||||| ||||||||||||| ||||||||||||||| |
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| T |
42198141 |
attttgtttttcttcattggactaaaatgctccaatatgggaaa |
42198098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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