View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21287_low_6 (Length: 536)
Name: NF21287_low_6
Description: NF21287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21287_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 471; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 8 - 518
Target Start/End: Original strand, 37396725 - 37397235
Alignment:
| Q |
8 |
gacatcatcaattggcaatataagcacatatacggaaatattattcataaaaaccttatgtaccttaactaattacaaggttaactcgaaaactttccat |
107 |
Q |
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| T |
37396725 |
gacatcatcaattggcaatataagcacatatacggaaatattattcataaaaaccttatgtaccttaactaattacaaggttaactcgaaaactttccat |
37396824 |
T |
|
| Q |
108 |
nnnnnnnntaatcattgaagattagacctaattaacccatttaaactttacatgcatgtaaacatatttcatgactatcatgcttgaacaacttcccttt |
207 |
Q |
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| T |
37396825 |
aaaaaaaataatgattgaagattagacctaattaacccatttaaactttacatgcatgtaaacatatttcatgactctcatgcttgaacaacttcccttt |
37396924 |
T |
|
| Q |
208 |
ctcaatacccttctcaaatcataaataatctcacccttattgttcaaagttgtcgcaaattgacgagataaataattaaaccgttaagaaaatacattgt |
307 |
Q |
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| T |
37396925 |
ctcaatacccttctcaaatcataaataatctcacccttattgttcaaaattgtcgcaaattgacgagataaataattaaaccattaagaaaatacattgt |
37397024 |
T |
|
| Q |
308 |
tgctgaaaatccaaataaaatttggtgataatgagtttgtatgaagacgagtgcttgaagtgtgtgaatgagaaaatggttttaagtttttgtgaaacct |
407 |
Q |
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| T |
37397025 |
tgctgaaaatccaaataaaatttggtgataatgagtttgtatgaagacgagtgcttgaagtgtgtgaatgagaaaatggttttaagtttttgtgaaacct |
37397124 |
T |
|
| Q |
408 |
ttgtggttaagaaatgaaaagtgggattaggtcgacaaaaccatagtaaactgattaatggtagtggaaacgagtagttgtgttattaatgtgatttagt |
507 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37397125 |
ttgtggttaagaaatgaaaagtgggattaggtcgacaaaaccatagtaaactgattaatggtagtggaaacgagtagttgtgttattaatgtgatttagt |
37397224 |
T |
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| Q |
508 |
gggggaggtta |
518 |
Q |
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||||||||||| |
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| T |
37397225 |
gggggaggtta |
37397235 |
T |
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