View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21287_low_9 (Length: 436)
Name: NF21287_low_9
Description: NF21287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21287_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 263; Significance: 1e-146; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 151 - 424
Target Start/End: Original strand, 39725501 - 39725775
Alignment:
| Q |
151 |
acgtaccagctccgggagtaatgcaaacaagaccagtaatcatgccttgaacagctccaataactgatggtttt-tgaagaatatgacatcaagccatgt |
249 |
Q |
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| T |
39725501 |
acgtaccagctccgggagtaatgcaaacaagaccagtaatcatgccttgaacagctccaataactgatggttttttgaagaatatgacatcaagccatgt |
39725600 |
T |
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| Q |
250 |
ccatacaaggaggcttgtagcagcacaaatgtttgtgttgagaacagccatggatgaatcaatgttggcagagtagggatctccaccgttgaaacctgcc |
349 |
Q |
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| T |
39725601 |
ccatacaaggaggcttgtagcagcacaaatgtttgtgttgagaacagccattgatgaatcaatgttggcagagtagggatctccaccgttgaaacctgcc |
39725700 |
T |
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| Q |
350 |
catcccatccatagtaaccctgcccctgccaacgttagtaacacattgtttggtgggaatctctccctgtccttc |
424 |
Q |
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| T |
39725701 |
catcccatccatagtaaccctgcccctgccaacgttagtaacacattgtttggtgggaatctctccctgtccttc |
39725775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 23 - 62
Target Start/End: Original strand, 39725415 - 39725454
Alignment:
| Q |
23 |
catacccaataatggagtatatggccgtgaaagaagggtc |
62 |
Q |
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| T |
39725415 |
catacccaataatggagtatatggccgtgaaagaagggtc |
39725454 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 168 - 243
Target Start/End: Original strand, 13348522 - 13348598
Alignment:
| Q |
168 |
gtaatgcaaacaagaccagtaatcatgccttgaacagctccaataactgatgg-tttttgaagaatatgacatcaag |
243 |
Q |
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| T |
13348522 |
gtaatgcaaaccaaaccagtaatcatgccttgaacagcaccaataacagaaggctttctgaagaaaatgacatcaag |
13348598 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 320 - 420
Target Start/End: Original strand, 13348675 - 13348775
Alignment:
| Q |
320 |
gagtagggatctccaccgttgaaacctgcccatcccatccatagtaaccctgcccctgccaacgttagtaacacattgtttggtgggaatctctccctgt |
419 |
Q |
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||||| |||||||| || ||||| |||| |||||||||||||| || ||||| ||||| ||| | || | | ||||||||||||||| || ||||||| |
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| T |
13348675 |
gagtaaggatctcctccattgaatcctgtccatcccatccataatagtcctgctcctgctaacataagaaggagattgtttggtgggaacctttccctgt |
13348774 |
T |
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| Q |
420 |
c |
420 |
Q |
| |
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| |
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|
| T |
13348775 |
c |
13348775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 248 - 417
Target Start/End: Original strand, 5624491 - 5624660
Alignment:
| Q |
248 |
gtccatacaaggaggcttgtagcagcacaaatgtttgtgttgagaacagccatggatgaatcaatgttggcagagtagggatctccaccgttgaaacctg |
347 |
Q |
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| T |
5624491 |
gtccacacaagaagactagttgcagcacatatgttagtgttgagtacagcaatagaagagtcaatgtttgctgcatatggtgctccaccattgaaccctg |
5624590 |
T |
|
| Q |
348 |
cccatcccatccatagtaaccctgcccctgccaacgttagtaacacattgtttggtgggaatctctccct |
417 |
Q |
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||| |||||||||| || ||||| ||||| | | | || || |||||||||||||||||||||||||| |
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| T |
5624591 |
accaacccatccataacaatcctgctcctgctagcataagcaatacattgtttggtgggaatctctccct |
5624660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 159 - 223
Target Start/End: Original strand, 5624401 - 5624465
Alignment:
| Q |
159 |
gctccgggagtaatgcaaacaagaccagtaatcatgccttgaacagctccaataactgatggttt |
223 |
Q |
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||||| ||||||||||||||||| || || ||||| || |||||||| ||||| ||||| ||||| |
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| T |
5624401 |
gctcctggagtaatgcaaacaagtcctgtcatcataccctgaacagcaccaatcactgaaggttt |
5624465 |
T |
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