View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21288_high_8 (Length: 273)
Name: NF21288_high_8
Description: NF21288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21288_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 181; Significance: 7e-98; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 1 - 260
Target Start/End: Complemental strand, 40974686 - 40974427
Alignment:
| Q |
1 |
ttcctctccctctccccctatgcactctcccttccgctacatttctctccaactgttctcgcttggaaagagcagtaatggaaagtatgttgcttctaag |
100 |
Q |
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| T |
40974686 |
ttcctctccctctcctcctatgcactctcccttccgctacatttctctccaaccgttctcgcttggaaagagcagtaatggaaagtctattgcttctaag |
40974587 |
T |
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| Q |
101 |
gcagtcaaagtggtccatttctgaaacatgcaacatcatatatacatacaacaacnnnnnnnnnnnnncaacggatattgttccaattcggtttatattt |
200 |
Q |
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| T |
40974586 |
gcaatcaaagtggtctatttctgaaacatgcaacatcatatatacatacaacaacaaaaaatcaaaaacaacagatattgtttcaattcggtttatattt |
40974487 |
T |
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| Q |
201 |
gtcgaattaagaacaatctagttcggaaaacatatcctgaacaggttcatgacagaagaa |
260 |
Q |
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| T |
40974486 |
gtcgaattaagaacaatctagttcgaaaaacatatcttgaacaggttcatgacagaagaa |
40974427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 15 - 66
Target Start/End: Original strand, 24142995 - 24143046
Alignment:
| Q |
15 |
cccctatgcactctcccttccgctacatttctctccaactgttctcgcttgg |
66 |
Q |
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| T |
24142995 |
cccctatgcactctcccttccgctacattcctctcaaactgctctcgcttgg |
24143046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 97 - 151
Target Start/End: Complemental strand, 42229059 - 42229005
Alignment:
| Q |
97 |
taaggcagtcaaagtggtccatttctgaaacatgcaacatcatatatacatacaa |
151 |
Q |
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| T |
42229059 |
taaggcggtccaagtggtccatatctgaaacatgcaatatcacatatacatacaa |
42229005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 111 - 151
Target Start/End: Original strand, 10060196 - 10060236
Alignment:
| Q |
111 |
tggtccatttctgaaacatgcaacatcatatatacatacaa |
151 |
Q |
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| T |
10060196 |
tggtccatatctgaaacatgcaaaatcatgtatacatacaa |
10060236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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