View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21288_low_1 (Length: 482)
Name: NF21288_low_1
Description: NF21288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21288_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 334; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 56 - 441
Target Start/End: Complemental strand, 13885959 - 13885574
Alignment:
| Q |
56 |
gagatgtgaacgaattagggttcatgagggaaaaaatcgaattatcgatgattcgagtttttcaaagatgaaagaagttgctgttgtaactaaaatcaac |
155 |
Q |
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| T |
13885959 |
gagatgtgaaccaattagggttcatgagggaaataatcgaattatcaatgattcgagtttttcaaagatgaaagaagttgctgttgtaactaaaatcaac |
13885860 |
T |
|
| Q |
156 |
gagaataataaaaactcagatgacacctctcaatttactcaggttcatagcgtatgtgcaagtcctgctttttcacttttagaaccgtgtttttctgatg |
255 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
13885859 |
gagaataataaaaactcagatgacacctctcaatttactcaggttcgtagcgtatgtgcaagtcctgctttttcactttcagaaccgtgtttttctgatg |
13885760 |
T |
|
| Q |
256 |
gcttcacatataaatctgacttttattcatcggcaacatccctttctagcatttatggcataactgacaattcaacaccaagctctccatatattaattc |
355 |
Q |
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|||| ||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| ||||||||| | ||||| ||||||||||||||||| |
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| T |
13885759 |
gcttgacatataaatctgacttttattcatcgacaacatccctctctagcatttatggcataacagacaattcagccccaagttctccatatattaattc |
13885660 |
T |
|
| Q |
356 |
tgatattcatagcaatatcaaaacatctcgttttgaaaaagagtacaagaaggaattgtcatcaaataggtctaacataccacctg |
441 |
Q |
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| T |
13885659 |
tgatattcgtagcaatatcaaaacatctcgttttgaaaaagagtacaagaaggaattgtcatcaaataggtctaacataccacctg |
13885574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 99
Target Start/End: Complemental strand, 1220198 - 1220153
Alignment:
| Q |
54 |
aggagatgtgaacgaattagggttcatgagggaaaaaatcgaatta |
99 |
Q |
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| T |
1220198 |
aggagatgtgaaccaattaggtttcatgacggaaacaatcgaatta |
1220153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 124; Significance: 1e-63; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 196 - 443
Target Start/End: Original strand, 29091915 - 29092162
Alignment:
| Q |
196 |
aggttcatagcgtatgtgcaagtcctgctttttcacttttagaaccgtgtttttctgatggcttcacatataaatctgacttttattcatcggcaacatc |
295 |
Q |
| |
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|||| |||||||| |||||||||||| |||| ||||||| ||||| |||||||||||| ||||| ||||||||||||| ||||||||||| | | || |
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| T |
29091915 |
aggtacatagcgtgtgtgcaagtcctactttgtcactttcagaacggtgtttttctgacggcttgtcatataaatctgaattttattcatcagtgtcgtc |
29092014 |
T |
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| Q |
296 |
cctttctagcatttatggcataactgacaattcaacaccaagctctccatatattaattctgatattcatagcaatatcaaaacatctcgttttgaaaaa |
395 |
Q |
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||| || |||||| ||||||| || ||||||||| ||||| ||||||||||||||| | |||||||||||||||||||||||||||||||| |||||| |
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| T |
29092015 |
cctctccagcattcatggcatgacagacaattcagtcccaagttctccatatattaatccagatattcatagcaatatcaaaacatctcgtttcgaaaaa |
29092114 |
T |
|
| Q |
396 |
gagtacaagaaggaattgtcatcaaataggtctaacataccacctgcc |
443 |
Q |
| |
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||||||||||||||||||||||||||||| |||| ||| || |||||| |
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| T |
29092115 |
gagtacaagaaggaattgtcatcaaatagatctatcatgcctcctgcc |
29092162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 56 - 99
Target Start/End: Original strand, 31913648 - 31913691
Alignment:
| Q |
56 |
gagatgtgaacgaattagggttcatgagggaaaaaatcgaatta |
99 |
Q |
| |
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||||||||||| ||||||||||||||| ||||| |||||||||| |
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| T |
31913648 |
gagatgtgaaccaattagggttcatgatggaaacaatcgaatta |
31913691 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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