View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21288_low_2 (Length: 478)
Name: NF21288_low_2
Description: NF21288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21288_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 423; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 1 - 463
Target Start/End: Complemental strand, 28310384 - 28309922
Alignment:
| Q |
1 |
taaatattgtcttcaacaaaaattaaaattaagtaatatgagataaaacactaaaatatatctagttaatttgagtacaatctctttcttagaaatccaa |
100 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28310384 |
taaatattgtcttcaacagaaattaaaattaagtaatatgagataaaatactaaaatatatctagttaatttgagtacaatctctttcttagaaatccaa |
28310285 |
T |
|
| Q |
101 |
ctaaagtactagacatattacttttatttttgtttcatgaacctacaaattaacatgaaaagcaaatgcacccttttctctctaacaagcatcctacacc |
200 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28310284 |
ctaaagtactagacatattactttaatttttgtttcatgaacctacaaattaacatgaaaagcaaatgcacccttttctctctaacaagcatcctacacc |
28310185 |
T |
|
| Q |
201 |
aacaatgagaagacaatgaagagggaacacaagccacatacaacattataaatccaaagtatcatatcagcccaaaggcagctggtcctggtcttgtaaa |
300 |
Q |
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||||||||||||||| |||||||| ||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
28310184 |
aacaatgagaagacagtgaagaggtggcacaagccacatacaacattataaacccaaagtatcatatcaacccaaaggcagctggtcctggtcttgtaaa |
28310085 |
T |
|
| Q |
301 |
tgtttggtgcaccgaggtcgcttttgaggccatgagacatgaagatacttgcaaagaatgaaaagttcgagaaaatcgtgagtcccacaatttggttttt |
400 |
Q |
| |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28310084 |
tgtttggtgcaccgaggtcgcttttgaggccataagacatgaagatacttgcaaagaatgaaaagttcgagaaaatcgtgagtcccacaatttggttttt |
28309985 |
T |
|
| Q |
401 |
gcaacatgtgtttacaagggaggaggagaatattgctagtgaaaatgctagcagtgttgttgt |
463 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28309984 |
gcaacatgtgtttacaagggaggaggagaatattgctagtgaaaatgctagcagtgttgttgt |
28309922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 28305397 - 28305176
Alignment:
| Q |
1 |
taaatattgtcttcaacaaaaattaaaattaagtaatatgagataaaacactaaaatatatctagttaatttgagtacaatctctttcttagaaatccaa |
100 |
Q |
| |
|
||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| | || |
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|
| T |
28305397 |
taaatattgtctttaacataaattaaaattaagtaatatgagataaaacactaaaatagttaaagttaatttgagtacaatctctttcttagaaaactaa |
28305298 |
T |
|
| Q |
101 |
ctaaagtactagacatattacttttatttttgtttcatgaacctacaaattaacatgaaaagcaaatgcacccttttctctctaacaagcatcctacacc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || ||||||||| |||| |||||| |
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| T |
28305297 |
ctaaagtactagacatattacttttatttttgtttcatgaacctacaaattaacatgaaaagcaaatgcaac--ttatgctctaacaatcatcatacacc |
28305200 |
T |
|
| Q |
201 |
aacaatgagaagacaatgaagagg |
224 |
Q |
| |
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|||||||| |||||| ||||||| |
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|
| T |
28305199 |
aacaatgaaaagacatagaagagg |
28305176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 66; Significance: 6e-29; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 19796014 - 19796109
Alignment:
| Q |
1 |
taaatattgtcttcaacaaaaattaaaattaagtaatatgagataaaacactaaaatatatctagttaatttgagtacaatctctttcttagaaatcc |
98 |
Q |
| |
|
||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
19796014 |
taaatattgtctt-aacagaaattaaaattaagtaatatgagataaaacactaaaa-cgatcaagttaatttgagtacaatctctttcttagaaatcc |
19796109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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