View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21288_low_3 (Length: 432)

Name: NF21288_low_3
Description: NF21288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21288_low_3
NF21288_low_3
[»] chr3 (41 HSPs)
chr3 (1-305)||(11635635-11635934)
chr3 (9-309)||(9157024-9157324)
chr3 (1-309)||(30159191-30159500)
chr3 (33-309)||(22994801-22995075)
chr3 (5-309)||(10961940-10962251)
chr3 (5-309)||(10965449-10965760)
chr3 (9-181)||(10883661-10883832)
chr3 (37-302)||(7832311-7832579)
chr3 (308-432)||(9156815-9156941)
chr3 (12-181)||(24127710-24127877)
chr3 (9-192)||(2777648-2777831)
chr3 (9-192)||(28329531-28329713)
chr3 (9-218)||(15196381-15196591)
chr3 (14-302)||(19302553-19302843)
chr3 (323-432)||(30159611-30159722)
chr3 (37-181)||(55032849-55032993)
chr3 (5-292)||(18541344-18541631)
chr3 (9-177)||(36533883-36534050)
chr3 (54-181)||(13558580-13558706)
chr3 (37-181)||(47053606-47053750)
chr3 (306-408)||(2777341-2777443)
chr3 (306-408)||(10883336-10883438)
chr3 (307-396)||(15196716-15196805)
chr3 (37-145)||(3839471-3839579)
chr3 (308-408)||(10961763-10961863)
chr3 (308-408)||(10965272-10965372)
chr3 (315-408)||(28329208-28329301)
chr3 (308-415)||(22995149-22995256)
chr3 (309-408)||(47053288-47053387)
chr3 (307-407)||(55033226-55033325)
chr3 (101-206)||(12541300-12541407)
chr3 (307-389)||(7832144-7832225)
chr3 (310-408)||(19302927-19303024)
chr3 (315-408)||(36534285-36534378)
chr3 (307-371)||(11757875-11757939)
chr3 (315-389)||(13558253-13558327)
chr3 (315-408)||(22026119-22026211)
chr3 (339-421)||(18541154-18541235)
chr3 (315-408)||(24127345-24127438)
chr3 (315-408)||(12541639-12541732)
chr3 (144-181)||(22026405-22026442)
[»] chr5 (19 HSPs)
chr5 (1-309)||(19688270-19688578)
chr5 (1-309)||(30763493-30763803)
chr5 (5-300)||(2455515-2455810)
chr5 (31-309)||(26550320-26550601)
chr5 (31-309)||(28563529-28563810)
chr5 (308-432)||(26550113-26550237)
chr5 (308-432)||(28563895-28564019)
chr5 (312-432)||(19688058-19688179)
chr5 (37-181)||(22938266-22938410)
chr5 (315-432)||(30763299-30763416)
chr5 (9-197)||(34134059-34134248)
chr5 (308-431)||(2455306-2455429)
chr5 (1-309)||(2837867-2838178)
chr5 (306-408)||(22938658-22938760)
chr5 (306-408)||(21333947-21334049)
chr5 (315-376)||(34134482-34134543)
chr5 (344-421)||(2838277-2838354)
chr5 (365-421)||(35382240-35382296)
chr5 (245-309)||(35382068-35382131)
[»] scaffold0134 (2 HSPs)
scaffold0134 (5-301)||(9235-9531)
scaffold0134 (306-431)||(9023-9148)
[»] chr6 (28 HSPs)
chr6 (31-309)||(32111755-32112034)
chr6 (5-309)||(21633068-21633371)
chr6 (10-310)||(11126791-11127091)
chr6 (1-301)||(12981361-12981663)
chr6 (39-302)||(24409049-24409314)
chr6 (9-310)||(25456121-25456423)
chr6 (37-192)||(23380025-23380181)
chr6 (5-206)||(14968400-14968603)
chr6 (37-181)||(12745594-12745738)
chr6 (31-177)||(28108872-28109023)
chr6 (306-432)||(32111559-32111684)
chr6 (307-424)||(11127168-11127285)
chr6 (37-181)||(22300912-22301056)
chr6 (308-421)||(25978630-25978742)
chr6 (306-408)||(23380421-23380523)
chr6 (308-421)||(7836509-7836622)
chr6 (31-105)||(7836889-7836963)
chr6 (308-421)||(21632863-21632975)
chr6 (306-396)||(12745292-12745382)
chr6 (307-395)||(12981765-12981852)
chr6 (307-407)||(22959484-22959584)
chr6 (307-407)||(23828808-23828908)
chr6 (307-408)||(14968110-14968209)
chr6 (315-408)||(24408856-24408950)
chr6 (306-373)||(22300628-22300695)
chr6 (307-389)||(25455960-25456044)
chr6 (343-415)||(28109225-28109297)
chr6 (149-192)||(7836820-7836864)
[»] chr4 (27 HSPs)
chr4 (36-309)||(26061022-26061296)
chr4 (1-309)||(53894984-53895291)
chr4 (37-204)||(19861498-19861667)
chr4 (9-181)||(56197674-56197845)
chr4 (37-302)||(3799007-3799278)
chr4 (18-302)||(15162919-15163205)
chr4 (1-181)||(39500528-39500708)
chr4 (9-177)||(33411146-33411313)
chr4 (9-181)||(27678150-27678321)
chr4 (9-176)||(15430950-15431116)
chr4 (9-176)||(15437564-15437730)
chr4 (308-432)||(26061367-26061491)
chr4 (37-192)||(49637709-49637864)
chr4 (306-421)||(53894788-53894902)
chr4 (306-408)||(15432593-15432695)
chr4 (307-408)||(5672335-5672436)
chr4 (328-414)||(15161664-15161750)
chr4 (306-408)||(27678555-27678657)
chr4 (306-396)||(3799390-3799480)
chr4 (315-408)||(19826095-19826187)
chr4 (307-408)||(49638065-49638164)
chr4 (306-376)||(56197373-56197443)
chr4 (319-408)||(19861769-19861858)
chr4 (315-408)||(39500203-39500296)
chr4 (37-106)||(19826421-19826490)
chr4 (330-408)||(56197306-56197384)
chr4 (330-376)||(22091341-22091387)
[»] scaffold0014 (2 HSPs)
scaffold0014 (5-301)||(225990-226286)
scaffold0014 (308-421)||(225789-225902)
[»] chr8 (24 HSPs)
chr8 (5-301)||(31983632-31983928)
chr8 (1-302)||(22223506-22223807)
chr8 (1-302)||(22229848-22230149)
chr8 (12-206)||(38249547-38249741)
chr8 (308-421)||(31983431-31983544)
chr8 (9-181)||(33878422-33878594)
chr8 (37-263)||(17929789-17930019)
chr8 (9-202)||(12585095-12585288)
chr8 (37-202)||(23945029-23945195)
chr8 (37-181)||(8910506-8910650)
chr8 (37-301)||(23645798-23646066)
chr8 (9-181)||(22175075-22175246)
chr8 (37-181)||(25592711-25592855)
chr8 (309-410)||(17929563-17929664)
chr8 (306-408)||(12584782-12584884)
chr8 (306-408)||(23645603-23645705)
chr8 (306-408)||(33878846-33878948)
chr8 (308-421)||(22223891-22223999)
chr8 (308-421)||(22230233-22230341)
chr8 (308-396)||(38249937-38250024)
chr8 (306-389)||(25593085-25593168)
chr8 (306-396)||(23945416-23945506)
chr8 (315-408)||(22175499-22175592)
chr8 (334-396)||(7945814-7945876)
[»] chr1 (11 HSPs)
chr1 (10-301)||(49718346-49718640)
chr1 (1-302)||(22454492-22454795)
chr1 (307-428)||(49718132-49718253)
chr1 (37-181)||(21019577-21019721)
chr1 (37-202)||(45940244-45940410)
chr1 (37-181)||(13640221-13640365)
chr1 (306-408)||(21019944-21020046)
chr1 (306-408)||(45939929-45940030)
chr1 (307-396)||(22454875-22454963)
chr1 (306-373)||(13640581-13640648)
chr1 (315-376)||(21912652-21912713)
[»] chr7 (19 HSPs)
chr7 (4-302)||(13810586-13810882)
chr7 (151-309)||(16222745-16222904)
chr7 (9-203)||(22256077-22256271)
chr7 (9-302)||(20595420-20595714)
chr7 (9-181)||(45288322-45288493)
chr7 (9-181)||(4544577-4544747)
chr7 (14-204)||(9274224-9274415)
chr7 (306-408)||(26137340-26137442)
chr7 (307-407)||(45288731-45288831)
chr7 (310-420)||(9274594-9274704)
chr7 (315-408)||(4544247-4544340)
chr7 (315-408)||(20595203-20595296)
chr7 (315-408)||(22255761-22255854)
chr7 (365-432)||(16222570-16222637)
chr7 (365-421)||(13810964-13811020)
chr7 (37-86)||(26137252-26137301)
chr7 (250-302)||(9274462-9274513)
chr7 (308-341)||(16222626-16222659)
chr7 (304-375)||(42780853-42780924)
[»] scaffold0002 (2 HSPs)
scaffold0002 (1-309)||(99364-99670)
scaffold0002 (307-405)||(99718-99815)
[»] chr2 (21 HSPs)
chr2 (10-309)||(11058542-11058844)
chr2 (308-432)||(11058327-11058451)
chr2 (9-206)||(24237172-24237370)
chr2 (37-202)||(45455923-45456089)
chr2 (9-206)||(25957547-25957747)
chr2 (9-181)||(1504501-1504672)
chr2 (12-181)||(25872848-25873016)
chr2 (37-181)||(13973024-13973168)
chr2 (9-181)||(9186527-9186697)
chr2 (9-181)||(31428621-31428792)
chr2 (315-408)||(9186939-9187032)
chr2 (306-408)||(25872521-25872623)
chr2 (306-410)||(13973401-13973505)
chr2 (306-396)||(45455632-45455722)
chr2 (315-408)||(16789015-16789108)
chr2 (315-408)||(30151016-30151109)
chr2 (315-408)||(31429026-31429119)
chr2 (306-408)||(1504900-1505001)
chr2 (311-408)||(25957971-25958068)
chr2 (315-408)||(24236851-24236944)
chr2 (40-88)||(18823825-18823873)
[»] scaffold0083 (2 HSPs)
scaffold0083 (37-302)||(27974-28239)
scaffold0083 (309-405)||(27752-27848)
[»] scaffold0360 (2 HSPs)
scaffold0360 (308-432)||(4440-4564)
scaffold0360 (4-60)||(1412-1468)
[»] scaffold0321 (3 HSPs)
scaffold0321 (37-181)||(4059-4203)
scaffold0321 (315-406)||(4437-4528)
scaffold0321 (250-302)||(4280-4331)
[»] scaffold0048 (4 HSPs)
scaffold0048 (9-197)||(27898-28087)
scaffold0048 (306-408)||(23392-23494)
scaffold0048 (9-111)||(23749-23851)
scaffold0048 (315-376)||(27603-27664)
[»] scaffold0126 (2 HSPs)
scaffold0126 (39-181)||(786-928)
scaffold0126 (306-408)||(1174-1277)
[»] scaffold0084 (2 HSPs)
scaffold0084 (12-206)||(28200-28392)
scaffold0084 (315-378)||(27831-27894)
[»] scaffold0270 (2 HSPs)
scaffold0270 (37-181)||(1275-1419)
scaffold0270 (315-408)||(1658-1751)
[»] scaffold0214 (4 HSPs)
scaffold0214 (37-192)||(12318-12473)
scaffold0214 (37-192)||(26334-26489)
scaffold0214 (307-408)||(26033-26132)
scaffold0214 (307-406)||(12012-12109)
[»] scaffold0034 (2 HSPs)
scaffold0034 (28-181)||(49523-49676)
scaffold0034 (315-411)||(49901-49997)
[»] scaffold0043 (1 HSPs)
scaffold0043 (309-387)||(12952-13030)
[»] scaffold0037 (3 HSPs)
scaffold0037 (316-408)||(96767-96860)
scaffold0037 (9-78)||(96112-96180)
scaffold0037 (96-181)||(96182-96267)
[»] scaffold1785 (2 HSPs)
scaffold1785 (316-376)||(280-340)
scaffold1785 (84-181)||(491-587)
[»] scaffold0035 (2 HSPs)
scaffold0035 (316-376)||(62890-62950)
scaffold0035 (84-181)||(63101-63197)
[»] scaffold0520 (1 HSPs)
scaffold0520 (339-408)||(10660-10729)
[»] scaffold0036 (1 HSPs)
scaffold0036 (317-394)||(111521-111597)
[»] scaffold1885 (1 HSPs)
scaffold1885 (323-373)||(46-96)


Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-115; HSPs: 41)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 1 - 305
Target Start/End: Complemental strand, 11635934 - 11635635
Alignment:
Q  1 aatatgataagggttcacactcaatcaacgtgcaagtctacatattaccatatgcttgaaaagtttctaaacgtcaatcaaaatcaatgtcattacacac 100  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  11635934 aatatgataagggttcacacacaatcaacgtgcaagtctacatattaccatacgcttgaaaagtttctaaacgtcaatcaaaatcaatgtcattacacac 11635835  T
Q  101 tttgaggtctttaagatttataatggggcttaggtaaagatgggatattatttggattagtaggctacacaaaatttgag-taggcactcctaagaaaat 199  Q
    |||||||| ||||||| |||||| | ||||||||||||||||||||||||||||||| |      ||||||||||||||| |||||||||||| | ||||    
T  11635834 tttgaggtatttaagagttataacgaggcttaggtaaagatgggatattatttggataa------tacacaaaatttgagttaggcactcctacggaaat 11635741  T
Q  200 taaagcatggattcaatcccacattcataccttgaaacaacaatttgtaaaggtactagagattacttgtaacttgttgggacaatcgagtttaaagtta 299  Q
    |||| ||||||||||||||| ||||||  ||||||||||||||||||||||||||||||||| || |||||||| |||||||||||||||||||||||||    
T  11635740 taaatcatggattcaatccctcattcaccccttgaaacaacaatttgtaaaggtactagagaatatttgtaactagttgggacaatcgagtttaaagtta 11635641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 9 - 309
Target Start/End: Complemental strand, 9157324 - 9157024
Alignment:
Q  9 aagggttcacactcaatcaacgtgcaagtctacatattaccatatgcttgaaaagtttctaaacgtcaatcaaaatcaatgtcattacacactttgaggt 108  Q
    |||||||||||| || || || ||||| |||||||||||||||| ||||||||| |||||||| ||||||||||||||||||||||||||||||||| ||    
T  9157324 aagggttcacacacagtcgacatgcaa-tctacatattaccatacgcttgaaaaatttctaaatgtcaatcaaaatcaatgtcattacacactttgatgt 9157226  T
Q  109 ctttaagatttataatggggcttaggtaaagatgggatattatttggattagtaggctacacaaaatttgag-taggcactcctaagaaaattaaagcat 207  Q
    |||||||  |||||| |||||||||||||||  |||||| ||||||||| |||||||||||||||||||||| ||||||||||||   |||||||||||     
T  9157225 ctttaagggttataacggggcttaggtaaaggcgggataatatttggataagtaggctacacaaaatttgagttaggcactcctacataaattaaagcaa 9157126  T
Q  208 ggattcaatcccacattcataccttgaaacaacaatttgtaaaggtactagagattacttgtaacttgttgggacaatcgagtttaaagttactcatatt 307  Q
     |||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||    
T  9157125 agattcaatcccacattcaaaccttgaaacaaccatttgtaaaggtactagagattatttgtaacttgttgggacaatcgagtttaaagttactcagatt 9157026  T
Q  308 tt 309  Q
    ||    
T  9157025 tt 9157024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 1 - 309
Target Start/End: Original strand, 30159191 - 30159500
Alignment:
Q  1 aatatgataagggttcacactcaatcaacgtgcaagtctacatattaccatatgcttgaaaagtttctaaacgtcaatcaaaatcaatgtcattacacac 100  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||    
T  30159191 aatatgataagggttcacactcaatcaacgtgcaggtctacatattaccatacgcttgaaaagtttctaaacgtcaatcaaaatcaatatcattacacac 30159290  T
Q  101 tttgaggtctttaagatttataatggggcttaggtaaagatgggatattatttggattagtaggctacacaaaatttgag-taggcactcctaagaaaat 199  Q
    |||||||||||| ||  |||||| | || |||||| ||| || |||| ||||||||| |||||||||||||||||||||| |||||| ||||| | ||||    
T  30159291 tttgaggtctttcagggttataacgaggtttaggttaaggtgagataatatttggataagtaggctacacaaaatttgagttaggcattcctacggaaat 30159390  T
Q  200 taaagcatggattcaatcccacattcataccttgaaacaacaatttgtaaaggtactagagattacttgtaacttgttgggacaatcgagtttaaagtta 299  Q
    ||||| ||||||||||| || ||||||  |||||||| |||||||||||||||||||||||| || ||||||||| || ||||||||| ||||||| |||    
T  30159391 taaagaatggattcaattcctcattcaccccttgaaataacaatttgtaaaggtactagagaatatttgtaactttttaggacaatcgggtttaaaatta 30159490  T
Q  300 ctcatatttt 309  Q
    |||| |||||    
T  30159491 ctcagatttt 30159500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 33 - 309
Target Start/End: Original strand, 22994801 - 22995075
Alignment:
Q  33 caagtctacatattaccatatgcttgaaaagtttctaaacgtcaatcaaaatcaatgtcattacacactttgaggtctttaagatttataatggggctta 132  Q
    |||||||||||||||||| | |||||||||||||||||| | ||||||||| |||||||||||||||||||||||||||| ||  |||||| ||||||||    
T  22994801 caagtctacatattaccaaacgcttgaaaagtttctaaatgccaatcaaaaccaatgtcattacacactttgaggtcttttagggttataacggggctta 22994900  T
Q  133 ggtaaagatgggatattatttggattagtaggctacacaaaatttga-gtaggcactcctaagaaaattaaagcatggattcaatcccacattcatacct 231  Q
    ||||||| ||||||| ||||||||| ||||||||||||||||||||| || |||||||||| |  | || || ||  || ||| |||| ||||||  | |    
T  22994901 ggtaaaggtgggataatatttggataagtaggctacacaaaatttgaggtcggcactcctacg-gatttgaaacacaga-tcattccctcattcaccctt 22994998  T
Q  232 tgaaacaacaatttgtaaaggtactagagattacttgtaacttgttgggacaatcgagtttaaagttactcatatttt 309  Q
    ||||||||| |||| | ||||||||||||| |||||||||||||||||||||||||||||| |||||||||| |||||    
T  22994999 tgaaacaac-attttttaaggtactagagaatacttgtaacttgttgggacaatcgagtttgaagttactcagatttt 22995075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 5 - 309
Target Start/End: Complemental strand, 10962251 - 10961940
Alignment:
Q  5 tgataagggttcacactcaatcaacgtgcaagtctacatattaccatatgcttgaaaagtttctaaacgtcaatcaaaatcaatgtcattacacactttg 104  Q
    |||||| ||||||||| |||||||| |||| |||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10962251 tgataaaggttcacacacaatcaacatgcaggtctacatattatcatacgcttgaaaagtttctaaacgtcaatcaaaatcaatgtcattacacactttg 10962152  T
Q  105 aggtctttaagatttataatggggcttaggtaaagatgggatattatttggattagtaggctacacaaaatttgag-taggcactcctaagaaaattaaa 203  Q
    ||||||| |||  |||||| ||||||||||| ||| ||| ||| ||||||||| |||||||||||||||||||||| |||||| || || | || || ||    
T  10962151 aggtcttaaaggattataacggggcttaggtgaaggtggaataatatttggataagtaggctacacaaaatttgagttaggcattcatacggaagtt-aa 10962053  T
Q  204 gca-tggattcaatcccacattcat--acc--ttgaaacaacaat--ttgtaaaggtactagagattacttgtaacttgttgggacaatcgagtttaaag 296  Q
    |||    |||||||||  |||||||  |||  ||| |||||||||  ||| || |||||||||||||| ||||||||| |||||||||||||||||  |     
T  10962052 gcacaaaattcaatccatcattcattcaccttttggaacaacaattcttgcaagggtactagagattatttgtaacttattgggacaatcgagtttggaa 10961953  T
Q  297 ttactcatatttt 309  Q
    ||||||| |||||    
T  10961952 ttactcagatttt 10961940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 5 - 309
Target Start/End: Complemental strand, 10965760 - 10965449
Alignment:
Q  5 tgataagggttcacactcaatcaacgtgcaagtctacatattaccatatgcttgaaaagtttctaaacgtcaatcaaaatcaatgtcattacacactttg 104  Q
    |||||| ||||||||| |||||||| |||| |||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10965760 tgataaaggttcacacacaatcaacatgcaggtctacatattatcatacgcttgaaaagtttctaaacgtcaatcaaaatcaatgtcattacacactttg 10965661  T
Q  105 aggtctttaagatttataatggggcttaggtaaagatgggatattatttggattagtaggctacacaaaatttgag-taggcactcctaagaaaattaaa 203  Q
    ||||||| |||  |||||| ||||||||||| ||| ||| ||| ||||||||| |||||||||||||||||||||| |||||| || || | || || ||    
T  10965660 aggtcttaaaggattataacggggcttaggtgaaggtggaataatatttggataagtaggctacacaaaatttgagttaggcattcatacggaagtt-aa 10965562  T
Q  204 gca-tggattcaatcccacattcat--acc--ttgaaacaacaat--ttgtaaaggtactagagattacttgtaacttgttgggacaatcgagtttaaag 296  Q
    |||    |||||||||  |||||||  |||  ||| |||||||||  ||| || |||||||||||||| ||||||||| |||||||||||||||||  |     
T  10965561 gcacaaaattcaatccatcattcattcaccttttggaacaacaattcttgcaagggtactagagattatttgtaacttattgggacaatcgagtttggaa 10965462  T
Q  297 ttactcatatttt 309  Q
    ||||||| |||||    
T  10965461 ttactcagatttt 10965449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 9 - 181
Target Start/End: Complemental strand, 10883832 - 10883661
Alignment:
Q  9 aagggttcacactcaatcaacgtgcaagtctacatattaccatatgcttgaaaagtttctaaacgtcaatcaaaatcaatgtcattacacactttgaggt 108  Q
    |||||||||||| ||||| || ||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |||||||||||||    
T  10883832 aagggttcacacacaatcgacatgcaa-tctacatattaccatacgcttgaaaagtttctaaacgtcaatcaaaatcaatgtcaatgcacactttgaggt 10883734  T
Q  109 ctttaagatttataatggggcttaggtaaagatgggatattatttggattagtaggctacacaaaatttgagt 181  Q
    ||| |||  |||||| ||||||||||| ||||||||||| ||||||||| |||||||||||||||||||||||    
T  10883733 cttaaagggttataacggggcttaggtgaagatgggataatatttggataagtaggctacacaaaatttgagt 10883661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 37 - 302
Target Start/End: Complemental strand, 7832579 - 7832311
Alignment:
Q  37 tctacatattaccatatgcttgaaaagtttctaaacgtcaatcaaaatcaatgtcattacacactttgaggtctttaagatttataatggggcttaggta 136  Q
    |||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| |||  |||||| ||||||||||||    
T  7832579 tctacatactaccatacgcttgaaaagtttctaaacgtcaatcaaaatcaatgtcaatgcacactttgaggtcttaaagggttataacggggcttaggta 7832480  T
Q  137 aagatgggatattatttggattagtaggctacacaaaa-tttgag-taggcactccta-agaaaattaaagcatggattcaatcccacattcataccttg 233  Q
    ||| ||||||| ||||||||| |||||||||||||||| |||||| ||||||||||||  |||  ||||||||   |||||||||  ||| ||  | |||    
T  7832479 aaggtgggataatatttggataagtaggctacacaaaattttgagttaggcactcctacggaagtttaaagcacaaattcaatccatcatgca-cctttg 7832381  T
Q  234 aaacaacaat--ttgtaaaggtactagagattacttgtaacttgttgggacaatcgagtttaaagttactc 302  Q
     |||||||||  |||| ||||||||||||| ||||||||| |  ||||||||||||||||| |||||||||    
T  7832380 gaacaacaatacttgtgaaggtactagagaatacttgtaa-tcattgggacaatcgagtttgaagttactc 7832311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 308 - 432
Target Start/End: Complemental strand, 9156941 - 9156815
Alignment:
Q  308 ttctttattctctagtacctccaccccaaacttagttggttgcaaattccaatagcaaccccaaacttattgtttagcaacactctacatagcctaactc 407  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  9156941 ttctttattctctagtacctccactgcaaacttagttggttgcaaattccaatagcaaccccaaacttattgtttagcaacaccctacatagcctaactc 9156842  T
Q  408 aaatataatat--ttttgggtcaaatc 432  Q
    |||||||||||  ||||||||||||||    
T  9156841 aaatataatatttttttgggtcaaatc 9156815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 12 - 181
Target Start/End: Complemental strand, 24127877 - 24127710
Alignment:
Q  12 ggttcacactcaatcaacgtgcaagtctacatattaccatatgcttgaaaagtttctaaacgtcaatcaaaatcaatgtcattacacactttgaggtctt 111  Q
    ||||||||| || || || ||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||    
T  24127877 ggttcacacacagtcgacatgcaa-tctacatattaccataagcttgaaaagtttctaaacgtcaatcaaaatcaatgtcaatgcacactttgaggtctt 24127779  T
Q  112 taagatttataatggggcttaggtaaagatgggatattatttggattagtaggctacacaaaatttgagt 181  Q
    ||||  |||||| ||||||||||| ||| ||||||| ||||||||| |||||||||||||||||||||||    
T  24127778 taagggttataacggggcttaggtgaaggtgggata-tatttggataagtaggctacacaaaatttgagt 24127710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 9 - 192
Target Start/End: Complemental strand, 2777831 - 2777648
Alignment:
Q  9 aagggttcacactcaatcaacgtgcaagtctacatattaccatatgcttgaaaagtttctaaacgtcaatcaaaatcaatgtcattacacactttgaggt 108  Q
    |||||||||||| || || || ||||| |||||||||||||||| |||||||||||||||| |||||||||||||||||||||| | |||||||||| ||    
T  2777831 aagggttcacacacagtcgacatgcaa-tctacatattaccataagcttgaaaagtttctagacgtcaatcaaaatcaatgtcaatgcacactttgatgt 2777733  T
Q  109 ctttaagatttataatggggcttaggtaaagatgggatattatttggattagtaggctacacaaaatttg-agtaggcactccta 192  Q
    ||| |||  |||||| ||||||||||| ||| ||||||| ||||||||| |||||||||||||||||||| ||||||||||||||    
T  2777732 cttaaagggttataacggggcttaggtgaaggtgggataatatttggataagtaggctacacaaaatttgaagtaggcactccta 2777648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 9 - 192
Target Start/End: Complemental strand, 28329713 - 28329531
Alignment:
Q  9 aagggttcacactcaatcaacgtgcaagtctacatattaccatatgcttgaaaagtttctaaacgtcaatcaaaatcaatgtcattacacactttgaggt 108  Q
    |||||||||||| || || || ||||| |||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| | ||||| |||||||    
T  28329713 aagggttcacacacagtcgacatgcaa-tctacatattaccataagcttgaaaagtttctaaacatcaatcaaaatcaatgtcaatgcacaccttgaggt 28329615  T
Q  109 ctttaagatttataatggggcttaggtaaagatgggatattatttggattagtaggctacacaaaatttgag-taggcactccta 192  Q
    ||| |||  |||||||||||||||||| ||| ||||||| ||||||||| |||||||||||||||||||||| ||||||||||||    
T  28329614 cttaaagggttataatggggcttaggtgaagttgggata-tatttggataagtaggctacacaaaatttgagttaggcactccta 28329531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 9 - 218
Target Start/End: Original strand, 15196381 - 15196591
Alignment:
Q  9 aagggttcacactcaatcaacgtgcaagtctacatattaccatatgcttgaaaagtttctaaacgtcaatcaaaatcaatgtcattacacactttgaggt 108  Q
    |||||||||||| || || || ||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| ||    
T  15196381 aagggttcacacacagtcgacatgcaatt-tacatattaccatatgcttgaaaagtttctaaacgtcaatcaaaatcaatgtcaatgcacactttgatgt 15196479  T
Q  109 ctttaagatttataatggggcttaggtaaagatgggatattatttggattagtaggctacacaaaa-tttgag-taggcactcctaagaaaattaaagca 206  Q
    ||||||   |||||| ||||||||||| ||| ||||||| ||||||||| |||||||||||||||| |||||| |||||||||||| | || ||||| ||    
T  15196480 ctttaatggttataacggggcttaggtgaaggtgggataatatttggataagtaggctacacaaaattttgagttaggcactcctacggaagttaaaaca 15196579  T
Q  207 tggattcaatcc 218  Q
    |  |||||||||    
T  15196580 taaattcaatcc 15196591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 14 - 302
Target Start/End: Original strand, 19302553 - 19302843
Alignment:
Q  14 ttcacactcaatcaacgtgcaagtctacatattaccatatgcttgaaaagtttctaaacgtcaatcaaaatcaatgtcattacacactttgaggtcttta 113  Q
    ||||||| ||||| || |||| ||||||||||||| |||  |||||| | ||||||||||||||||||| ||||| ||| |||||||||||||||||||     
T  19302553 ttcacacacaatcgacatgcaggtctacatattacgatagacttgaagattttctaaacgtcaatcaaagtcaatatcactacacactttgaggtctttc 19302652  T
Q  114 agatttataatggggcttaggtaaagatgggatattatttggattagtaggctacacaaaatttgag-taggcactcctaagaaaattaaagca-tggat 211  Q
    |   |||||| ||||||||||| ||| ||||||| |||||| || |||||||||||||||||||||| |||||| ||||| | || ||||||||    ||    
T  19302653 aaggttataacggggcttaggtgaaggtgggataatatttgaataagtaggctacacaaaatttgagttaggcattcctacggaagttaaagcacaaaat 19302752  T
Q  212 tcaatcccacattcataccttgaaaca--acaatttgtaaaggtactagagattacttgtaacttgttgggacaatcgagtttaaagttactc 302  Q
    |||||||| | |||   | ||| ||||  | || |||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||    
T  19302753 tcaatccctc-ttccccctttggaacatcaaaacttgtaaaggtactagagaatacttgtaac-tgttgggacaatcgagtttaaagttactc 19302843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 323 - 432
Target Start/End: Original strand, 30159611 - 30159722
Alignment:
Q  323 tacctccaccccaaacttagttggttgcaaattccaatagcaaccccaaacttattgtttagcaacactctacatagcctaactcaaatataata--ttt 420  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||  |||    
T  30159611 tacctccaccccaaacttagttggttgcaaattccaatagcaaccccaaacttattgtttagcaacaccctacatagcctaactcaaatataatattttt 30159710  T
Q  421 ttgggtcaaatc 432  Q
    ||||||||||||    
T  30159711 ttgggtcaaatc 30159722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 37 - 181
Target Start/End: Original strand, 55032849 - 55032993
Alignment:
Q  37 tctacatattaccatatgcttgaaaagtttctaaacgtcaatcaaaatcaatgtcattacacactttgaggtctttaagatttataatggggcttaggta 136  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| |||  |||||| |||||||||||     
T  55032849 tctacatattaccatacgcttgaaaagtttctaaacgtcaatcaaaatcaatgtcaatgcacactttgaggtcttaaagggttataacggggcttaggtg 55032948  T
Q  137 aagatgggatattatttggattagtaggctacacaaaatttgagt 181  Q
    ||| ||||||| ||||| ||| |||||||||||||||||||||||    
T  55032949 aaggtgggataatatttcgataagtaggctacacaaaatttgagt 55032993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 5 - 292
Target Start/End: Complemental strand, 18541631 - 18541344
Alignment:
Q  5 tgataagggttcacactcaatcaacgtgcaagtctacatattaccatatgcttgaaaagtttctaaacgtcaatcaaaatcaatgtcattacacactttg 104  Q
    ||||||||||||||||  | || || |||| |||||||||||||||||  |||||||| |||||||| || ||||||| || ||||||||| |||||||     
T  18541631 tgataagggttcacac--agtcgacatgcaggtctacatattaccatacacttgaaaattttctaaatgttaatcaaagtccatgtcattagacacttta 18541534  T
Q  105 aggtctttaagat-ttataatggggcttaggtaaagatgggatattatttggattagtaggctacacaaaatttgagt-aggcactcctaagaaaattaa 202  Q
    ||||||||  |   |||||||||||||||||||||| ||||||| ||||||||| ||| |||| |||||||||| ||| | ||||||||| |||| || |    
T  18541533 aggtctttttggggttataatggggcttaggtaaagctgggataatatttggataagttggctgcacaaaatttaagttatgcactcctacgaaatttta 18541434  T
Q  203 agcatggattcaatccca-cattcataccttgaaacaacaatttgtaaaggtactagagattacttgtaacttgttgggacaatcgagttt 292  Q
    | ||  |||||||||||  ||||||  ||||||||||||||||| |||||||||||||||  | |||||| || |||||||||||||||||    
T  18541433 aacacagattcaatcccctcattcac-ccttgaaacaacaatttataaaggtactagagaacatttgtaatttattgggacaatcgagttt 18541344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 9 - 177
Target Start/End: Original strand, 36533883 - 36534050
Alignment:
Q  9 aagggttcacactcaatcaacgtgcaagtctacatattaccatatgcttgaaaagtttctaaacgtcaatcaaaatcaatgtcattacacactttgaggt 108  Q
    |||||||||||| || || || ||||| ||||||||||||||||  ||| |||||||||||||||||||||||||||||||||| | |||||||||||||    
T  36533883 aagggttcacacacagtcgacatgcaa-tctacatattaccatacacttaaaaagtttctaaacgtcaatcaaaatcaatgtcaatgcacactttgaggt 36533981  T
Q  109 ctttaagatttataatggggcttaggtaaagatgggatattatttggattagtaggctacacaaaattt 177  Q
    ||| |||  |||||| ||||||||||| ||| ||||||| ||||||||| || ||||||||||||||||    
T  36533982 cttaaagggttataacggggcttaggtgaaggtgggataatatttggataagcaggctacacaaaattt 36534050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 54 - 181
Target Start/End: Complemental strand, 13558706 - 13558580
Alignment:
Q  54 gcttgaaaagtttctaaacgtcaatcaaaatcaatgtcattacacactttgaggtctttaagatttataatggggcttaggtaaagatgggatattattt 153  Q
    ||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||  |||||| ||||||||||| ||| ||||||| |||||    
T  13558706 gcttgaaaagtttctaaacgtcaatcaaaatcaatgtcaatgcacactttgaggtctttaagggttataacggggcttaggtgaaggtgggata-tattt 13558608  T
Q  154 ggattagtaggctacacaaaatttgagt 181  Q
    |||| |||||||||||||||||||||||    
T  13558607 ggataagtaggctacacaaaatttgagt 13558580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 37 - 181
Target Start/End: Complemental strand, 47053750 - 47053606
Alignment:
Q  37 tctacatattaccatatgcttgaaaagtttctaaacgtcaatcaaaatcaatgtcattacacactttgaggtctttaagatttataatggggcttaggta 136  Q
    |||||||||||||||| |||| ||||||| |||||||||||||||||||||||| | | |||||||||||||||| |||  |||||| |||||||||||     
T  47053750 tctacatattaccatacgctttaaaagttgctaaacgtcaatcaaaatcaatgttaatgcacactttgaggtcttaaagggttataacggggcttaggtg 47053651  T
Q  137 aagatgggatattatttggattagtaggctacacaaaatttgagt 181  Q
    ||| ||||||| |||||| || |||||||||||||||||||||||    
T  47053650 aaggtgggataatatttgaataagtaggctacacaaaatttgagt 47053606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 306 - 408
Target Start/End: Complemental strand, 2777443 - 2777341
Alignment:
Q  306 ttttctttattctctagtacctccaccccaaacttagttggttgcaaattccaatagcaaccccaaacttattgtttagcaacactctacatagcctaac 405  Q
    |||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| ||||||  |||||||    
T  2777443 ttttctttgttctctagtacccccaccccaaacttagttggttgcaaattccaatagcaaccccaaacttaatatttagcaacattctacaatgcctaac 2777344  T
Q  406 tca 408  Q
    |||    
T  2777343 tca 2777341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 306 - 408
Target Start/End: Complemental strand, 10883438 - 10883336
Alignment:
Q  306 ttttctttattctctagtacctccaccccaaacttagttggttgcaaattccaatagcaaccccaaacttattgtttagcaacactctacatagcctaac 405  Q
    |||||||| |||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| | |||||||||| ||||||  |||||||    
T  10883438 ttttctttgttctctagtacccccacccaaaacttagttggttgcaaattccaatagcaaccccaaacttaatatttagcaacattctacaatgcctaac 10883339  T
Q  406 tca 408  Q
    |||    
T  10883338 tca 10883336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 307 - 396
Target Start/End: Original strand, 15196716 - 15196805
Alignment:
Q  307 tttctttattctctagtacctccaccccaaacttagttggttgcaaattccaatagcaaccccaaacttattgtttagcaacactctaca 396  Q
    ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| ||||||    
T  15196716 tttctttattccctagtacccccaccccaaacttagttggttgcaaattccaatagcaaccccaaaattattatttagcaacattctaca 15196805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 37 - 145
Target Start/End: Complemental strand, 3839579 - 3839471
Alignment:
Q  37 tctacatattaccatatgcttgaaaagtttctaaacgtcaatcaaaatcaatgtcattacacactttgaggtctttaagatttataatggggcttaggta 136  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |  ||||||||||||||| |||| |||||| || ||||||||     
T  3839579 tctacatattaccatacgcttgaaaagtttctaaacgtcaatcaaaatcaatgtcaatgaacactttgaggtcttaaagagttataacggagcttaggtg 3839480  T
Q  137 aagatggga 145  Q
    || ||||||    
T  3839479 aatatggga 3839471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 308 - 408
Target Start/End: Complemental strand, 10961863 - 10961763
Alignment:
Q  308 ttctttattctctagtacctccaccccaaacttagttggttgcaaattccaatagcaaccccaaacttattgtttagcaacactctacatagcctaactc 407  Q
    |||||| |||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| |||| ||||| ||||||  |||||||||    
T  10961863 ttctttgttctctagtaccaccaccccaaacttagttggttgcaaattcctatagcaaccccaaacttattttttaacaacattctacaatgcctaactc 10961764  T
Q  408 a 408  Q
    |    
T  10961763 a 10961763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 308 - 408
Target Start/End: Complemental strand, 10965372 - 10965272
Alignment:
Q  308 ttctttattctctagtacctccaccccaaacttagttggttgcaaattccaatagcaaccccaaacttattgtttagcaacactctacatagcctaactc 407  Q
    |||||| |||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| |||| ||||| ||||||  |||||||||    
T  10965372 ttctttgttctctagtaccaccaccccaaacttagttggttgcaaattcctatagcaaccccaaacttattttttaacaacattctacaatgcctaactc 10965273  T
Q  408 a 408  Q
    |    
T  10965272 a 10965272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 315 - 408
Target Start/End: Complemental strand, 28329301 - 28329208
Alignment:
Q  315 ttctctagtacctccaccccaaacttagttggttgcaaattccaatagcaaccccaaacttattgtttagcaacactctacatagcctaactca 408  Q
    |||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| | |||||||||| ||||||  ||||||||||    
T  28329301 ttctctagtatctccaccccaaacttaattggttgcaaattccaatagcaaccccaaacttaatatttagcaacattctacaatgcctaactca 28329208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 308 - 415
Target Start/End: Original strand, 22995149 - 22995256
Alignment:
Q  308 ttctttattctctagtacctccaccccaaacttagttggttgcaaattccaatagcaaccccaaacttattgtttagcaacactctacatagcctaactc 407  Q
    |||||| |||||||||||| |||||||||| ||||| || |||||||||||| ||||||| |||||||||||||||||||||| |||| ||||||||||     
T  22995149 ttctttgttctctagtacccccaccccaaatttagtcggctgcaaattccaaaagcaacctcaaacttattgtttagcaacaccctacttagcctaacta 22995248  T
Q  408 aaatataa 415  Q
    ||| ||||    
T  22995249 aaaaataa 22995256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 309 - 408
Target Start/End: Complemental strand, 47053387 - 47053288
Alignment:
Q  309 tctttattctctagtacctccaccccaaacttagttggttgcaaattccaatagcaaccccaaacttattgtttagcaacactctacatagcctaactca 408  Q
    ||||| |||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| | |||||||||| |||||   ||||||||||    
T  47053387 tctttgttctctagtacccccaccccaaacttagttagttgcaaattccaatagcaaccccaaacttaatatttagcaacattctacgatgcctaactca 47053288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 307 - 407
Target Start/End: Original strand, 55033226 - 55033325
Alignment:
Q  307 tttctttattctctagtacctccaccccaaacttagttggttgcaaattccaatagcaaccccaaacttattgtttagcaacactctacatagcctaact 406  Q
    ||||||| |||||||||||| |||||||||||||| ||||||||||||| |||||||||||||||||||| | |||||||||| ||||||  ||||||||    
T  55033226 tttctttgttctctagtacc-ccaccccaaacttaattggttgcaaatttcaatagcaaccccaaacttaatatttagcaacattctacaatgcctaact 55033324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 101 - 206
Target Start/End: Original strand, 12541300 - 12541407
Alignment:
Q  101 tttgaggtctttaagatttataatggggcttaggtaaagatgggatatt-atttggattagtaggctacacaaaatttgag-taggcactcctaagaaaa 198  Q
    |||||||||||||||  |||||| ||||||||||| ||| ||||||||| |||||||| |||||||||||||||||||||| |||||||||||| ||||     
T  12541300 tttgaggtctttaagggttataacggggcttaggtgaaggtgggatatttatttggataagtaggctacacaaaatttgagttaggcactcctacgaaag 12541399  T
Q  199 ttaaagca 206  Q
    ||||||||    
T  12541400 ttaaagca 12541407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 307 - 389
Target Start/End: Complemental strand, 7832225 - 7832144
Alignment:
Q  307 tttctttattctctagtacctccaccccaaacttagttggttgcaaattccaatagcaaccccaaacttattgtttagcaaca 389  Q
    ||||||| |||||||||||| |||||||||||||||||||||||||||| ||||||||| |||||||||||| ||||||||||    
T  7832225 tttctttgttctctagtacc-ccaccccaaacttagttggttgcaaatttcaatagcaatcccaaacttattatttagcaaca 7832144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 310 - 408
Target Start/End: Original strand, 19302927 - 19303024
Alignment:
Q  310 ctttattctctagtacctccaccccaaacttagttggttgcaaattccaatagcaaccccaaacttattgtttagcaacactctacatagcctaactca 408  Q
    |||| |||||||||||| ||||||||||| ||||||| |||||||||||||||||||||||||||||||  ||||||||| ||||||  ||||||||||    
T  19302927 ctttgttctctagtacccccaccccaaacatagttggctgcaaattccaatagcaaccccaaacttatt-attagcaacattctacaatgcctaactca 19303024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 315 - 408
Target Start/End: Original strand, 36534285 - 36534378
Alignment:
Q  315 ttctctagtacctccaccccaaacttagttggttgcaaattccaatagcaaccccaaacttattgtttagcaacactctacatagcctaactca 408  Q
    |||||||||||| |||||||||||||| ||||||||||||||||| ||||||| |||||||| | |||||||||| ||||||  ||||||||||    
T  36534285 ttctctagtacccccaccccaaacttaattggttgcaaattccaaaagcaaccacaaacttaatatttagcaacattctacaatgcctaactca 36534378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 307 - 371
Target Start/End: Complemental strand, 11757939 - 11757875
Alignment:
Q  307 tttctttattctctagtacctccaccccaaacttagttggttgcaaattccaatagcaaccccaa 371  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||    
T  11757939 tttctttattctctagtacccccaccccaaacttagttggttgcaaatttcaatagcaaccccaa 11757875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 315 - 389
Target Start/End: Complemental strand, 13558327 - 13558253
Alignment:
Q  315 ttctctagtacctccaccccaaacttagttggttgcaaattccaatagcaaccccaaacttattgtttagcaaca 389  Q
    |||||||||| | |||||||||||||| |||||||||||||||||||||||||||||||||| | ||||||||||    
T  13558327 ttctctagtatccccaccccaaacttaattggttgcaaattccaatagcaaccccaaacttaatatttagcaaca 13558253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 315 - 408
Target Start/End: Complemental strand, 22026211 - 22026119
Alignment:
Q  315 ttctctagtacctccaccccaaacttagttggttgcaaattccaatagcaaccccaaacttattgtttagcaacactctacatagcctaactca 408  Q
    |||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| | || |||||||  |||||  ||||||||||    
T  22026211 ttctctagtacc-ccaccccaaacttaattggttgcaaattccaatagcaaccccaaacttaatattaagcaacatcctacaatgcctaactca 22026119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 339 - 421
Target Start/End: Complemental strand, 18541235 - 18541154
Alignment:
Q  339 ttagttggttgcaaattccaatagcaaccccaaacttattgtttagcaacactctacatagcctaactcaaatataatatttt 421  Q
    ||||||||||| ||||| ||||||||||||||||||||||||||||| |||| |||||||| |||||||||||| ||| ||||    
T  18541235 ttagttggttgtaaatttcaatagcaaccccaaacttattgtttagctacaccctacatag-ctaactcaaatacaatttttt 18541154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 315 - 408
Target Start/End: Complemental strand, 24127438 - 24127345
Alignment:
Q  315 ttctctagtacctccaccccaaacttagttggttgcaaattccaatagcaaccccaaacttattgtttagcaacactctacatagcctaactca 408  Q
    |||||||||| | |||||||||| ||| ||||||||||||||||||||||| |||||||||| | |||||||||| |||| |  ||||||||||    
T  24127438 ttctctagtatccccaccccaaatttaattggttgcaaattccaatagcaaacccaaacttaatatttagcaacattctaaaatgcctaactca 24127345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 315 - 408
Target Start/End: Original strand, 12541639 - 12541732
Alignment:
Q  315 ttctctagtacctccaccccaaacttagttggttgcaaattccaatagcaaccccaaacttattgtttagcaacactctacatagcctaactca 408  Q
    |||||||||| | | |||||||||||| |||||||||||||||||||||||||||| ||||| | || |||||||  |||||  ||||||||||    
T  12541639 ttctctagtatccctaccccaaacttaattggttgcaaattccaatagcaaccccatacttaatattaagcaacatcctacaatgcctaactca 12541732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 144 - 181
Target Start/End: Complemental strand, 22026442 - 22026405
Alignment:
Q  144 gatattatttggattagtaggctacacaaaatttgagt 181  Q
    |||| ||||||||| |||||||||||||||||||||||    
T  22026442 gataatatttggataagtaggctacacaaaatttgagt 22026405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 206; Significance: 1e-112; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 1 - 309
Target Start/End: Complemental strand, 19688578 - 19688270
Alignment:
Q  1 aatatgataagggttcacactcaatcaacgtgcaagtctacatattaccatatgcttgaaaagtttctaaacgtcaatcaaaatcaatgtcattacacac 100  Q
    ||||||| |||||||||||||||||| ||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||    
T  19688578 aatatgacaagggttcacactcaatcgacgtgcaagtctacatattaccatacgcttgaaaaatttctaaacgtcaatcaaaatcaatgtcattacacac 19688479  T
Q  101 tttgaggtctttaagatttataatggggcttaggtaaagatgggatattatttggattagtaggctacacaaaatttgag-taggcactcctaagaaaat 199  Q
    |||||||||||||||  |||||| ||||||||||||||| ||||||| ||||||||| |||| ||||||||||||||||| ||||||||||||   ||||    
T  19688478 tttgaggtctttaagggttataacggggcttaggtaaaggtgggataatatttggataagtaagctacacaaaatttgagttaggcactcctatagaaat 19688379  T
Q  200 taaagcatggattcaatcccacattcataccttgaaacaacaatttgtaaaggtactagagattacttgtaacttgttgggacaatcgagtttaaagtta 299  Q
    |||||||  |||||||||||||||||| ||||||||||||||||||||||| ||||||||| ||| ||||||||| || |||||||||||||||||||||    
T  19688378 taaagcaaagattcaatcccacattcacaccttgaaacaacaatttgtaaaagtactagagcttatttgtaactt-ttaggacaatcgagtttaaagtta 19688280  T
Q  300 ctcatatttt 309  Q
    |||| |||||    
T  19688279 ctcagatttt 19688270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 1 - 309
Target Start/End: Complemental strand, 30763803 - 30763493
Alignment:
Q  1 aatatgataagggttcacactcaatcaacgtgcaagtctacatattaccatatgcttgaaaagtttctaaacgtcaatcaaaatcaatgtcattacacac 100  Q
    |||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||    
T  30763803 aatatgataagggttcacactcaatcaacgtgcaggtctacatattgccatacgcttgaaaagtttctaaacgtcaatcaaaatcaatatcattacacac 30763704  T
Q  101 tttgaggtctttaagatttataatggggcttaggtaaagatggga-tattatttggattagtaggctacacaaaatttgag-taggcactcctaagaaaa 198  Q
    |||||||||||| ||  |||||| |||| |||||||||| || || || ||||||||| |||||||||||||||||||||| |||||| ||||| | |||    
T  30763703 tttgaggtctttcagggttataacggggtttaggtaaaggtgagattaatatttggataagtaggctacacaaaatttgagttaggcattcctacggaaa 30763604  T
Q  199 ttaaagcatggattcaatcccacattcataccttgaaacaacaatttgtaaaggtactagagattacttgtaacttgttgggacaatcgagtttaaagtt 298  Q
    |||||| ||||||||||| || |||||| ||||||||| |||||||| ||||||||||||||| || |||||||||||||||||||||||||||||| ||    
T  30763603 ttaaagaatggattcaattcctcattcacaccttgaaataacaatttataaaggtactagagaatatttgtaacttgttgggacaatcgagtttaaaatt 30763504  T
Q  299 actcatatttt 309  Q
    ||||| |||||    
T  30763503 actcaaatttt 30763493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 5 - 300
Target Start/End: Complemental strand, 2455810 - 2455515
Alignment:
Q  5 tgataagggttcacactcaatcaacgtgcaagtctacatattaccatatgcttgaaaagtttctaaacgtcaatcaaaatcaatgtcattacacactttg 104  Q
    |||||||||||||||| || || || |||  ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2455810 tgataagggttcacacacagtcgacatgctggtctacatattaccatacgcttgaaaagtttctaaacgtcaatcaaaatcaatgtcattacacactttg 2455711  T
Q  105 aggtctttaagatttataatggggcttaggtaaagatgggatattatttggattagtaggctacacaaaatttgag-taggcactcctaagaaaattaaa 203  Q
    |||||||||||  |||||| || |||||||||||| || |||||||||||||| | |||||||||||||||||||| ||||||||| || ||||||||||    
T  2455710 aggtctttaagggttataacggagcttaggtaaaggtgtgatattatttggataaataggctacacaaaatttgagttaggcactcatacgaaaattaaa 2455611  T
Q  204 gcatggattcaatcccacattcataccttgaaacaacaatttgtaaaggtactagagattacttgtaacttgttgggacaatcgagtttaaagttac 300  Q
    |||||||||||||||| ||||||  |||||||||||||| |||||||||||||||||| || || ||||||||||||||||||||||||||| ||||    
T  2455610 gcatggattcaatccctcattcaccccttgaaacaacaa-ttgtaaaggtactagagaatatttataacttgttgggacaatcgagtttaaaattac 2455515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 31 - 309
Target Start/End: Complemental strand, 26550601 - 26550320
Alignment:
Q  31 tgcaagtctacatattaccatatgcttgaaaagtttctaaacgtcaatcaaaatcaatgtcattacacactttgaggtctttaagatttataatggggct 130  Q
    ||||| |||||||||||||||| ||||||||| ||||||||||||||| ||||||||| ||| | ||||||||||||||||||||  |||||| ||||||    
T  26550601 tgcaaatctacatattaccatacgcttgaaaaatttctaaacgtcaataaaaatcaatatcaatgcacactttgaggtctttaagggttataacggggct 26550502  T
Q  131 taggtaaagatgggatattatttggattagtaggctacacaaaattt-gagt-aggcact-cctaagaaaattaaagcatggattcaatcccacattcat 227  Q
    ||||| ||| ||||||| ||||||||| ||||||||||||||||||| |||| ||||| | |||| | || |||||| |||||||||||||| ||||||     
T  26550501 taggtgaaggtgggataatatttggataagtaggctacacaaaattttgagttaggcaattcctacggaagttaaagaatggattcaatccctcattcac 26550402  T
Q  228 accttgaaacaacaatttgtaaaggtactagagattacttgtaacttgttgggacaatcgagtttaaagttactcatatttt 309  Q
     |||||||| ||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| |||||    
T  26550401 cccttgaaataacaatttgtaaaggtactagagattatttgtaacttgttaggacaatcgagtttaaagttactcaaatttt 26550320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 31 - 309
Target Start/End: Original strand, 28563529 - 28563810
Alignment:
Q  31 tgcaagtctacatattaccatatgcttgaaaagtttctaaacgtcaatcaaaatcaatgtcattacacactttgaggtctttaagatttataatggggct 130  Q
    ||||| |||||||||||||||| ||||||||| ||||||||||||||| ||||||||| ||| | ||||||||||||||||||||  |||||| ||||||    
T  28563529 tgcaaatctacatattaccatacgcttgaaaaatttctaaacgtcaataaaaatcaatatcaatgcacactttgaggtctttaagggttataacggggct 28563628  T
Q  131 taggtaaagatgggatattatttggattagtaggctacacaaaattt-gagt-aggcact-cctaagaaaattaaagcatggattcaatcccacattcat 227  Q
    ||||| ||| ||||||| ||||||||| ||||||||||||||||||| |||| ||||| | |||| | || |||||| |||||||||||| | ||||||     
T  28563629 taggtgaaggtgggataatatttggataagtaggctacacaaaattttgagttaggcaattcctacggaagttaaagaatggattcaatcactcattcac 28563728  T
Q  228 accttgaaacaacaatttgtaaaggtactagagattacttgtaacttgttgggacaatcgagtttaaagttactcatatttt 309  Q
     |||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||    
T  28563729 cccttgaaataacaatttgtaaaggtactagagattatttgtaacttgttgggacaatcgagtttaaagttactcaaatttt 28563810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 308 - 432
Target Start/End: Complemental strand, 26550237 - 26550113
Alignment:
Q  308 ttctttattctctagtacctccaccccaaacttagttggttgcaaattccaatagcaaccccaaacttattgtttagcaacactctacatagcctaactc 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||    
T  26550237 ttctttattctctagtacctccaccccaaacttagttggttgcaaattccaatagcaaccccaaacttattgtttagcaacaccctacacagcctaactc 26550138  T
Q  408 aaatataatatttttgggtcaaatc 432  Q
    |||||||||||||||||||||||||    
T  26550137 aaatataatatttttgggtcaaatc 26550113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 308 - 432
Target Start/End: Original strand, 28563895 - 28564019
Alignment:
Q  308 ttctttattctctagtacctccaccccaaacttagttggttgcaaattccaatagcaaccccaaacttattgtttagcaacactctacatagcctaactc 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||    
T  28563895 ttctttattctctagtacctccaccccaaacttagttggttgcaaattccaatagcaaccccaaacttattgtttagcaacaccctacacagcctaactc 28563994  T
Q  408 aaatataatatttttgggtcaaatc 432  Q
    |||||||||||||||||||||||||    
T  28563995 aaatataatatttttgggtcaaatc 28564019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 312 - 432
Target Start/End: Complemental strand, 19688179 - 19688058
Alignment:
Q  312 ttattctctagtacctccaccccaaacttagttggttgcaaattccaatagcaaccccaaacttattg-tttagcaacactctacatagcctaactcaaa 410  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||    
T  19688179 ttattctctagtacctccaccccaaacttagttggttgcaaattccaataacaaccccaaacttattgttttagcaacaccctacatagcctaactcaaa 19688080  T
Q  411 tataatatttttgggtcaaatc 432  Q
    ||||||||||||||||||||||    
T  19688079 tataatatttttgggtcaaatc 19688058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 37 - 181
Target Start/End: Original strand, 22938266 - 22938410
Alignment:
Q  37 tctacatattaccatatgcttgaaaagtttctaaacgtcaatcaaaatcaatgtcattacacactttgaggtctttaagatttataatggggcttaggta 136  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| |||| |||||  |||||||||||     
T  22938266 tctacatattaccatacgcttgaaaagtttctaaacgtcaatcaaaatcaatgtcaatgcacactttgaggtcttaaagagttatagcggggcttaggtg 22938365  T
Q  137 aagatgggatattatttggattagtaggctacacaaaatttgagt 181  Q
    ||| ||||||| ||||||||| |||||||||||||||||||||||    
T  22938366 aaggtgggataatatttggataagtaggctacacaaaatttgagt 22938410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 315 - 432
Target Start/End: Complemental strand, 30763416 - 30763299
Alignment:
Q  315 ttctctagtacctccaccccaaacttagttggttgcaaattccaatagcaaccccaaacttattgtttagcaacactctacatagcctaactcaaatata 414  Q
    ||||||||||||||||||||||| ||||||||||||||||||| | |||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  30763416 ttctctagtacctccaccccaaatttagttggttgcaaattccgaaagcaaccccaaacttattgtttagcaacaccctacatagcctaactcaaatata 30763317  T
Q  415 atatttttgggtcaaatc 432  Q
    | ||||||||||||||||    
T  30763316 acatttttgggtcaaatc 30763299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 9 - 197
Target Start/End: Original strand, 34134059 - 34134248
Alignment:
Q  9 aagggttcacactcaatcaacgtgcaagtctacatattaccatatgcttgaaaagtttctaaacgtcaatcaaaatcaat-gtcattacacactttgagg 107  Q
    |||||||||||| || || || ||||| |||||||||||||||| |||||||| |||||||||||||||||||||||| | |||| | ||||||||||||    
T  34134059 aagggttcacacacagtcgacatgcaa-tctacatattaccataagcttgaaaggtttctaaacgtcaatcaaaatcatttgtcaatgcacactttgagg 34134157  T
Q  108 tctttaagatttataatggggcttaggtaaagatgggatattatttggattagtaggctacacaaaatttgag-taggcactcctaagaaa 197  Q
    ||||||||  |||||| ||||||||||| ||| ||||||| ||||||||| |||||||||||||||||||||| |||||| ||||| ||||    
T  34134158 tctttaagggttataacggggcttaggtgaaggtgggataatatttggataagtaggctacacaaaatttgagttaggcattcctacgaaa 34134248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 308 - 431
Target Start/End: Complemental strand, 2455429 - 2455306
Alignment:
Q  308 ttctttattctctagtacctccaccccaaacttagttggttgcaaattccaatagcaaccccaaacttattgtttagcaacactctacatagcctaactc 407  Q
    |||||| ||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| || |||||||| ||||||||||||||||    
T  2455429 ttctttgttctctagtacctccaccccaaacttagttgtttgcaaattccaaaagcaaccccaaacttattcttcagcaacaccctacatagcctaactc 2455330  T
Q  408 aaatataatatttttgggtcaaat 431  Q
    |||||||| |||||| ||||||||    
T  2455329 aaatataacattttttggtcaaat 2455306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 309
Target Start/End: Original strand, 2837867 - 2838178
Alignment:
Q  1 aatatgataagggttcacactcaatcaacgtgcaagtctacatattaccatatgcttgaaaagtttctaaacgtcaatcaaaatcaatgtcattacacac 100  Q
    |||||||  ||||||||||| || || || ||||||||||||||||||||||   ||||||| ||| ||||||||||||||||||||||||| |   |||    
T  2837867 aatatgaatagggttcacacacagtcgacatgcaagtctacatattaccatacatttgaaaaatttataaacgtcaatcaaaatcaatgtcaatgtccac 2837966  T
Q  101 tttgaggtctttaagatttataatggggcttaggtaaagatgggatattatttggattagtaggctacacaaaa-tttgag-taggcactcctaagaaaa 198  Q
    |||||| ||||||||  |||||| ||||||||||| ||| ||||||| ||||| | | |||||||||||||||| |||||| || ||||||||| | ||     
T  2837967 tttgagatctttaagggttataacggggcttaggtgaaggtgggataatattttgttaagtaggctacacaaaattttgagttatgcactcctacggaag 2838066  T
Q  199 ttaaagca-tggattcaatcccacattcataccttgaaacaaca--atttgtaaaggtactagagattacttgtaacttgttgggacaatcgagtttaaa 295  Q
    ||||||||    |||||||||  ||||||  | ||| |||||||    |||||||||| | ||||| |||||||||| ||||||||||||| ||||||||    
T  2838067 ttaaagcacaaaattcaatccatcattca-cctttggaacaacacctcttgtaaaggtgccagagaatacttgtaac-tgttgggacaatcaagtttaaa 2838164  T
Q  296 gttactcatatttt 309  Q
    |||||||| |||||    
T  2838165 gttactcaaatttt 2838178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 306 - 408
Target Start/End: Original strand, 22938658 - 22938760
Alignment:
Q  306 ttttctttattctctagtacctccaccccaaacttagttggttgcaaattccaatagcaaccccaaacttattgtttagcaacactctacatagcctaac 405  Q
    |||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| ||||||  |||||||    
T  22938658 ttttctttgttctctagtacccccaccccaaacttagttggttgcaaattccaatagcaaccccaaacttaatatttagcaacattctacaatgcctaac 22938757  T
Q  406 tca 408  Q
    |||    
T  22938758 tca 22938760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 306 - 408
Target Start/End: Original strand, 21333947 - 21334049
Alignment:
Q  306 ttttctttattctctagtacctccaccccaaacttagttggttgcaaattccaatagcaaccccaaacttattgtttagcaacactctacatagcctaac 405  Q
    |||||||| |||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| ||||||  |||||||    
T  21333947 ttttctttgttctctagtatcaccaccccaaacttagttggttgcaaattccaatagcaaccccaaacttaatatttagcaacattctacaatgcctaac 21334046  T
Q  406 tca 408  Q
    |||    
T  21334047 tca 21334049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 315 - 376
Target Start/End: Original strand, 34134482 - 34134543
Alignment:
Q  315 ttctctagtacctccaccccaaacttagttggttgcaaattccaatagcaaccccaaactta 376  Q
    |||||||||| | |||||||||||||| ||||||||||||||||||||||||||||||||||    
T  34134482 ttctctagtatccccaccccaaacttaattggttgcaaattccaatagcaaccccaaactta 34134543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 344 - 421
Target Start/End: Original strand, 2838277 - 2838354
Alignment:
Q  344 tggttgcaaattccaatagcaaccccaaacttattgtttagcaacactctacatagcctaactcaaatataatatttt 421  Q
    ||||||||||||||||||||||||| ||||||||| |||||||||| ||||||  | |||||||| |||||| |||||    
T  2838277 tggttgcaaattccaatagcaacccaaaacttattatttagcaacattctacaatgtctaactcagatataacatttt 2838354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 365 - 421
Target Start/End: Original strand, 35382240 - 35382296
Alignment:
Q  365 accccaaacttattgtttagcaacactctacatagcctaactcaaatataatatttt 421  Q
    |||||||||||||||||||||||||| || | ||||| ||||||||||||| |||||    
T  35382240 accccaaacttattgtttagcaacaccctgcttagccaaactcaaatataacatttt 35382296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 245 - 309
Target Start/End: Original strand, 35382068 - 35382131
Alignment:
Q  245 tgtaaaggtactagagattacttgtaacttgttgggacaatcgagtttaaagttactcatatttt 309  Q
    |||||||||||||||||||| |||||||   ||||||||||||||||| || ||||||| |||||    
T  35382068 tgtaaaggtactagagattatttgtaac-aattgggacaatcgagtttgaaattactcaaatttt 35382131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0134 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: scaffold0134
Description:

Target: scaffold0134; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 5 - 301
Target Start/End: Complemental strand, 9531 - 9235
Alignment:
Q  5 tgataagggttcacactcaatcaacgtgcaagtctacatattaccatatgcttgaaaagtttctaaacgtcaatcaaaatcaatgtcattacacactttg 104  Q
    |||||||||||||||| || || || |||  ||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9531 tgataagggttcacacacagtcgacatgctggtctacatattaccatgcgcttgaaaagtttctaaacgtcaatcaaaatcaatgtcattacacactttg 9432  T
Q  105 aggtctttaagatttataatggggcttaggtaaagatgggatattatttggattagtaggctacacaaaatttgag-taggcactcctaagaaaattaaa 203  Q
    |||||||||||  |||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| ||||||| |||| ||||||||||    
T  9431 aggtctttaagggttataatggggcttaggtaaaggtgggatattatttggataagtaggctacacaaaatttgagttaggcacgcctacgaaaattaaa 9332  T
Q  204 gcatggattcaatcccacattcataccttgaaacaacaatttgtaaaggtactagagattacttgtaacttgttgggacaatcgagtttaaagttact 301  Q
    |||||||||||||||| ||||||  |||||||||||||| |||||||||||||| ||| || || ||||||||||||||||||||||||||| |||||    
T  9331 gcatggattcaatccctcattcaccccttgaaacaacaa-ttgtaaaggtactatagaatatttataacttgttgggacaatcgagtttaaaattact 9235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0134; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 306 - 431
Target Start/End: Complemental strand, 9148 - 9023
Alignment:
Q  306 ttttctttattctctagtacctccaccccaaacttagttggttgcaaattccaatagcaaccccaaacttattgtttagcaacactctacatagcctaac 405  Q
    |||||||| |||||||||| |||||||||||||||||||| || ||||||||||  ||||||||||||||||||||||||||||| ||||||||||||||    
T  9148 ttttctttgttctctagtatctccaccccaaacttagttgtttacaaattccaaatgcaaccccaaacttattgtttagcaacaccctacatagcctaac 9049  T
Q  406 tcaaatataatatttttgggtcaaat 431  Q
    |||||||||| |||||| ||||||||    
T  9048 tcaaatataacattttttggtcaaat 9023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 188; Significance: 1e-102; HSPs: 28)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 31 - 309
Target Start/End: Complemental strand, 32112034 - 32111755
Alignment:
Q  31 tgcaagtctacatattaccatatgcttgaaaagtttctaaacgtcaatcaaaatcaatgtcattacacactttgaggtctttaagatttataatggggct 130  Q
    |||| |||||||||||| |||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||   |||||||||||||    
T  32112034 tgcaggtctacatattatcatacgcttgaaaagtttctaaacgtcaatcaaaatcaacgtcattacacactttgaggtctttaaaggttataatggggct 32111935  T
Q  131 taggtaaagatgggatattatttggattagtaggctacacaaaatttgag-taggcactcctaagaaaattaaagcatggattcaatcccacattcatac 229  Q
    ||||||||| ||||||||||||| ||| ||||||||| |||||||||||| ||| |||||||| | |||||||||||||||||||||||| ||||||  |    
T  32111934 taggtaaaggtgggatattatttagataagtaggctatacaaaatttgagttagacactcctacggaaattaaagcatggattcaatccctcattcaccc 32111835  T
Q  230 cttgaaacaacaatttgtaaaggtactagagattacttgtaacttgttgggacaatcgagtttaaagttactcatatttt 309  Q
    |||||||||||||||||||||| ||||||||| || | ||||||||||||||||||||||||||||||||||||||||||    
T  32111834 cttgaaacaacaatttgtaaagatactagagaatattggtaacttgttgggacaatcgagtttaaagttactcatatttt 32111755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 5 - 309
Target Start/End: Complemental strand, 21633371 - 21633068
Alignment:
Q  5 tgataagggttcacactcaatcaacgtgcaagtctacatattaccatatgcttgaaaagtttctaaacgtcaatcaaaatcaatgtcattacacactttg 104  Q
    |||||||| ||||||| || || || || | ||||| |||||||||||  |||||||||||||||||||||||||||||||| |||||||||||||||||    
T  21633371 tgataaggtttcacacacagtcgacatgtaggtctatatattaccatacacttgaaaagtttctaaacgtcaatcaaaatcattgtcattacacactttg 21633272  T
Q  105 aggtctttaagatttataatggggcttaggtaaagatgggatattatttggattagtaggctacacaaaatttgag-taggcactcctaagaaaattaaa 203  Q
    |||||||||||  |||||| | |||||| |||||  ||||||| ||||||||| |||||||||||| ||||||||| |||| ||||||| | ||||||||    
T  21633271 aggtctttaagggttataacgaggcttatgtaaatgtgggataatatttggataagtaggctacacgaaatttgagttaggaactcctacggaaattaaa 21633172  T
Q  204 gcatggattcaatcccacattcataccttgaaacaacaatttgtaaaggtactagagattacttgtaacttgttgggacaatcgagtttaaagttactca 303  Q
    |||  |||| |||||| ||||||  | |||||||||||| ||||||||||||||||||||| ||||||| | | ||||||||||||||| || |||||||    
T  21633171 gcaaagattaaatccctcattcaccctttgaaacaacaa-ttgtaaaggtactagagattatttgtaac-tatcgggacaatcgagtttgaaattactca 21633074  T
Q  304 tatttt 309  Q
     |||||    
T  21633073 gatttt 21633068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 10 - 310
Target Start/End: Original strand, 11126791 - 11127091
Alignment:
Q  10 agggttcacactcaatcaacgtgcaagtctacatattaccatatgcttgaaaagtttctaaacgtcaatcaaaatcaatgtcattacacactttgaggtc 109  Q
    ||||||||||| ||||| || ||||| || |||||||||||||  |||||||||||||||||||||||||||||||||||||| | ||||||||| ||||    
T  11126791 agggttcacacacaatcgacatgcaa-tccacatattaccatacacttgaaaagtttctaaacgtcaatcaaaatcaatgtcaatgcacactttgtggtc 11126889  T
Q  110 tttaagatttataatggggcttaggtaaagatgggatattatttggattagtaggctacacaaaatttgag-taggcactcctaagaaaattaaagcatg 208  Q
    ||| ||  |||||| ||||||||| | ||| ||||||| ||||||||| |||||||||||||||||||||| |||||||||||| | || ||||| |||     
T  11126890 tttcagggttataacggggcttagatgaaggtgggataatatttggataagtaggctacacaaaatttgagttaggcactcctacggaagttaaaacata 11126989  T
Q  209 gattcaatcccacattcataccttgaaacaacaat--ttgtaaaggtactagagattacttgtaacttgttgggacaatcgagtttaaagttactcatat 306  Q
     ||||||||| |||||||  | ||| |||||||||  |||||| ||||||||||||||||||||||   ||| ||||||||||||| |||||||||| ||    
T  11126990 aattcaatccaacattca-cctttggaacaacaattcttgtaagggtactagagattacttgtaac-aattgagacaatcgagtttgaagttactcagat 11127087  T
Q  307 tttc 310  Q
    ||||    
T  11127088 tttc 11127091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 1 - 301
Target Start/End: Original strand, 12981361 - 12981663
Alignment:
Q  1 aatatgataagggttcacactcaatcaacgtgcaagtctacatattaccatatgcttgaaaagtttctaaacgtcaatcaaaatcaatgtcattacacac 100  Q
    ||||||||||||||||||||||||||||| ||||| |||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| | |||||    
T  12981361 aatatgataagggttcacactcaatcaacatgcaaatctacatattaccatacgcttgaaaagtttctaaacatcaatcaaaatcaatgtcaatgcacac 12981460  T
Q  101 tttgaggtctttaagatttataatggggcttaggtaaagatgggatattatttggattagtaggctacacaaaa-tttgag-taggcactcctaagaaaa 198  Q
    ||||||||||| |||  |||||| ||||||||||| ||| ||||||| ||||| ||| ||||||||| |||||| |||||| |||||| ||||| ||||     
T  12981461 tttgaggtcttgaagggttataacggggcttaggtgaaggtgggataatatttcgataagtaggctatacaaaattttgagttaggcattcctacgaaag 12981560  T
Q  199 ttaaagcatggattcaatcccacattcataccttgaaacaacaat--ttgtaaaggtactagagattacttgtaacttgttgggacaatcgagtttaaag 296  Q
    ||||||||   ||||| |||   |||||  | ||| |||||||||  |||||| || ||||||||||| |||||||   ||||||||||||||||| |||    
T  12981561 ttaaagcacaaattcattccattattca-cctttggaacaacaattcttgtaagggaactagagattatttgtaac-aattgggacaatcgagtttgaag 12981658  T
Q  297 ttact 301  Q
    |||||    
T  12981659 ttact 12981663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 39 - 302
Target Start/End: Complemental strand, 24409314 - 24409049
Alignment:
Q  39 tacatattaccatatgcttgaaaagtttctaaacgtcaatcaaaatcaatgtcattacacactttgaggtctttaagatttataatggggcttaggtaaa 138  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||| | ||||||||||||||||||||  |||||||||||||||||| ||    
T  24409314 tacatattaccatatgcttgaaaagtttctaaacgtcaatcaaaatccatgtcaatgcacactttgaggtctttaagggttataatggggcttaggtgaa 24409215  T
Q  139 gatgggatattatttggattagtaggctacacaaaatttgag-taggcactcctaagaaaattaaagcatggattcaatcccacattcataccttgaaac 237  Q
    | ||||||||||||||||| |||||||||||||||||||||| |||||||||||| | || ||||||||   |||||||||  ||||||    ||| |||    
T  24409214 ggtgggatattatttggataagtaggctacacaaaatttgagttaggcactcctacggaagttaaagcacaaattcaatccatcattcaccttttggaac 24409115  T
Q  238 aacaat--ttgtaaaggtactagagattacttgtaacttgttgggacaatcgagtttaaagttactc 302  Q
    ||||||  ||| || |||||||||||||| ||  |||   |||||||||| |||||| |||||||||    
T  24409114 aacaattcttgcaagggtactagagattatttaaaac-aattgggacaattgagtttgaagttactc 24409049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 9 - 310
Target Start/End: Complemental strand, 25456423 - 25456121
Alignment:
Q  9 aagggttcacactcaatcaacgtgcaagtctacatattaccatatgcttgaaaagtttctaaacgtcaatcaaaatcaatgtcattacacactttgaggt 108  Q
    |||||||||||| || || || ||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |||||||||||||    
T  25456423 aagggttcacacacagtcgacatgcaa-tctacatattaccatacgcttgaaaagtttctaaacgtcaatcaaaatcaatgtcaatgcacactttgaggt 25456325  T
Q  109 ctttaagatttataatggggcttaggtaaagatgggatattatttggattagtaggctacacaaaa-tttgag-taggcactcctaagaaaattaaagca 206  Q
    ||| |||  |||||| ||||||||||| ||| ||||||| ||||||||| ||||||||||| |||| |||||| |||||||||||| | || ||||||||    
T  25456324 cttaaagggttataacggggcttaggtgaaggtgggataatatttggataagtaggctacataaaattttgagttaggcactcctacggaagttaaagca 25456225  T
Q  207 tggattcaatcccacattcataccttgaaacaacaat--ttgtaaaggtactagagattacttgtaacttgttgggacaatcgagtttaaagttactcat 304  Q
       ||| |||||  ||||||  | ||| |||||||||  |||||| |||||||||||||| || ||||   |||||||||| ||||||||||||||||||    
T  25456224 caaatttaatccatcattca-cctttggaacaacaattcttgtaagggtactagagattatttataac-aattgggacaattgagtttaaagttactcat 25456127  T
Q  305 attttc 310  Q
    ||||||    
T  25456126 attttc 25456121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 37 - 192
Target Start/End: Original strand, 23380025 - 23380181
Alignment:
Q  37 tctacatattaccatatgcttgaaaagtttctaaacgtcaatcaaaatcaatgtcattacacactttgaggtctttaagatttataatggggcttaggta 136  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||  |||||| |||||||||||     
T  23380025 tctacatattaccataagcttgaaaagtttctaaacgtcaatcaaaatcaatgtcaatgcacactttgaggtctttaagggttataacggggcttaggtg 23380124  T
Q  137 aagatgggatattatttggattagtaggctacacaaaatttgag-taggcactccta 192  Q
    |   ||||||||||||||||| |||||||||||||||||||||| ||||||||||||    
T  23380125 attgtgggatattatttggataagtaggctacacaaaatttgagttaggcactccta 23380181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 5 - 206
Target Start/End: Complemental strand, 14968603 - 14968400
Alignment:
Q  5 tgataagggttcacactcaatcaacgtgcaagtctacatattaccatatgcttgaaaagtttctaaacgtcaatcaaaatcaatgtcattacacactttg 104  Q
    |||||||||||||||| || || || |||| |||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| | |||||||||    
T  14968603 tgataagggttcacacacagtcgacatgcaggtctacatattatcatacgcttgaaaagtttctaaacgtcaatcaaaatcaatgtcaatgcacactttg 14968504  T
Q  105 aggtctttaagatttataatggggcttaggtaaagatgggatattatttggattagtaggctacacaaaa-tttgag-taggcactcctaagaaaattaa 202  Q
    ||||||| ||   |||||| ||||||||||| ||| || |||| ||||||||| |||||||||||||||| |||||| ||||||||||||  ||| ||||    
T  14968503 aggtcttaaatggttataacggggcttaggtgaaggtgcgataatatttggataagtaggctacacaaaattttgagttaggcactcctacaaaagttaa 14968404  T
Q  203 agca 206  Q
    ||||    
T  14968403 agca 14968400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 37 - 181
Target Start/End: Complemental strand, 12745738 - 12745594
Alignment:
Q  37 tctacatattaccatatgcttgaaaagtttctaaacgtcaatcaaaatcaatgtcattacacactttgaggtctttaagatttataatggggcttaggta 136  Q
    ||||||||||||||||  |||||||| ||||||||||||||||||||||||||||| | |||||||||||||||| |||  |||||| |||||||||||     
T  12745738 tctacatattaccatacacttgaaaaatttctaaacgtcaatcaaaatcaatgtcaatgcacactttgaggtcttaaagggttataacggggcttaggtg 12745639  T
Q  137 aagatgggatattatttggattagtaggctacacaaaatttgagt 181  Q
    ||| ||||||| ||||||||| |||||||||||||||||||||||    
T  12745638 aaggtgggataatatttggataagtaggctacacaaaatttgagt 12745594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 31 - 177
Target Start/End: Original strand, 28108872 - 28109023
Alignment:
Q  31 tgcaagtctacatattaccatatgcttgaaaagtttctaaacgtcaatcaaaatcaatgtcatta-----cacactttgaggtctttaagatttataatg 125  Q
    |||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| | ||     |||||||||||||||| |||  ||||||||    
T  28108872 tgcaagactacatattaccatacgcttgaaaagtttctaaacgtcaatcaaaatcaatgttaatataatgcacactttgaggtcttaaagggttataatg 28108971  T
Q  126 gggcttaggtaaagatgggatattatttggattagtaggctacacaaaattt 177  Q
    ||||||| || ||| ||||||| ||||||||| |||||||||||||||||||    
T  28108972 gggcttaagtgaaggtgggataatatttggataagtaggctacacaaaattt 28109023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 306 - 432
Target Start/End: Complemental strand, 32111684 - 32111559
Alignment:
Q  306 ttttctttattctctagtacctccaccccaaacttagttggttgcaaattccaatagcaaccccaaacttattgtttagcaacactctacatagcctaac 405  Q
    |||| ||| |||||||||||| |||||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||||||| |||||| ||||||||    
T  32111684 tttttttttttctctagtacc-ccaccccaaacttagttgattgtaaatttcaatagcaaccccaaacttattgtttagcaacattctacaaagcctaac 32111586  T
Q  406 tcaaatataatatttttgggtcaaatc 432  Q
    |||||||||| ||||||| ||||||||    
T  32111585 tcaaatataacatttttgtgtcaaatc 32111559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 307 - 424
Target Start/End: Original strand, 11127168 - 11127285
Alignment:
Q  307 tttctttattctctagtacctccaccccaaacttagttggttgcaaattccaatagcaaccccaaacttattgtttagcaacactctacatagcctaact 406  Q
    |||||||||||||||||||| |||| |||||||||||||||||||||||||||||| ||||||||||||||  |||||||||| ||||||  ||||||||    
T  11127168 tttctttattctctagtacccccacgccaaacttagttggttgcaaattccaatagtaaccccaaacttataatttagcaacattctacaatgcctaact 11127267  T
Q  407 caaatataatatttttgg 424  Q
    ||||||||| ||||||||    
T  11127268 caaatataacatttttgg 11127285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 37 - 181
Target Start/End: Complemental strand, 22301056 - 22300912
Alignment:
Q  37 tctacatattaccatatgcttgaaaagtttctaaacgtcaatcaaaatcaatgtcattacacactttgaggtctttaagatttataatggggcttaggta 136  Q
    |||||||||||||||| |||| |||||||||||||||||||||||||||||||||| | ||||||||||||||||| ||  ||||||  | ||||| ||     
T  22301056 tctacatattaccataagcttaaaaagtttctaaacgtcaatcaaaatcaatgtcaatgcacactttgaggtcttttagggttataacagagcttatgtg 22300957  T
Q  137 aagatgggatattatttggattagtaggctacacaaaatttgagt 181  Q
    ||| ||||||| ||||||||| ||||||||||| |||||||||||    
T  22300956 aaggtgggataatatttggataagtaggctacataaaatttgagt 22300912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 308 - 421
Target Start/End: Complemental strand, 25978742 - 25978630
Alignment:
Q  308 ttctttattctctagtacctccaccccaaacttagttggttgcaaattccaatagcaaccccaaacttattgtttagcaacactctacatagcctaactc 407  Q
    |||||| |||||||||||| |||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| ||||| |||||    
T  25978742 ttctttgttctctagtacc-ccacccaaaacttagttggttgcaaattccaaaagcaaccccaaacttattgtttagcaacaccctacttagccgaactc 25978644  T
Q  408 aaatataatatttt 421  Q
    |||||||| |||||    
T  25978643 aaatataacatttt 25978630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 306 - 408
Target Start/End: Original strand, 23380421 - 23380523
Alignment:
Q  306 ttttctttattctctagtacctccaccccaaacttagttggttgcaaattccaatagcaaccccaaacttattgtttagcaacactctacatagcctaac 405  Q
    |||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| ||||||  |||||||    
T  23380421 ttttctttgttctctagtacccccaccccaaacttagttggttgcaaattccaatagcaaccccaaacttaatatttagcaacattctacaatgcctaac 23380520  T
Q  406 tca 408  Q
    |||    
T  23380521 tca 23380523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 308 - 421
Target Start/End: Complemental strand, 7836622 - 7836509
Alignment:
Q  308 ttctttattctctagtacctccaccccaaacttagttggttgcaaattccaatagcaaccccaaacttattgtttagcaacactctacatagcctaactc 407  Q
    |||||| |||||||||||| | |||||||||||||||||||| |||||   | |||||||||||||||||||||||||||||| ||||||||||||||||    
T  7836622 ttctttgttctctagtaccccgaccccaaacttagttggttgaaaattttgaaagcaaccccaaacttattgtttagcaacaccctacatagcctaactc 7836523  T
Q  408 aaatataatatttt 421  Q
    |||||||| |||||    
T  7836522 aaatataacatttt 7836509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 31 - 105
Target Start/End: Complemental strand, 7836963 - 7836889
Alignment:
Q  31 tgcaagtctacatattaccatatgcttgaaaagtttctaaacgtcaatcaaaatcaatgtcattacacactttga 105  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  7836963 tgcaagtctacatattaccatatgcttgaaaagtttctaaacgtcaatcaaaatcaatgtcaatacacactttga 7836889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 308 - 421
Target Start/End: Complemental strand, 21632975 - 21632863
Alignment:
Q  308 ttctttattctctagtacctccaccccaaacttagttggttgcaaattccaatagcaaccccaaacttattgtttagcaacactctacatagcctaactc 407  Q
    |||||| |||||||||||| |||||  ||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| ||||  ||||||||||    
T  21632975 ttctttgttctctagtacc-ccacctgaaacttagttggttgcaaattccaaaagcaaccccaaactcattgtttagcaacaccctactcagcctaactc 21632877  T
Q  408 aaatataatatttt 421  Q
    |||||||| |||||    
T  21632876 aaatataacatttt 21632863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 306 - 396
Target Start/End: Complemental strand, 12745382 - 12745292
Alignment:
Q  306 ttttctttattctctagtacctccaccccaaacttagttggttgcaaattccaatagcaaccccaaacttattgtttagcaacactctaca 396  Q
    |||||||| |||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| | |||||||||| ||||||    
T  12745382 ttttcttttttctctagtacccccaccctaaacttagttggttgcaaattccaatagcaaccccaaacttaatatttagcaacattctaca 12745292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 307 - 395
Target Start/End: Original strand, 12981765 - 12981852
Alignment:
Q  307 tttctttattctctagtacctccaccccaaacttagttggttgcaaattccaatagcaaccccaaacttattgtttagcaacactctac 395  Q
    |||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| |||||    
T  12981765 tttctttattttctagtacc-ccaccccaaacttagttggttgcaaattccaatagcaatcccaaacttattatttagcaacattctac 12981852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 307 - 407
Target Start/End: Complemental strand, 22959584 - 22959484
Alignment:
Q  307 tttctttattctctagtacctccaccccaaacttagttggttgcaaattccaatagcaaccccaaacttattgtttagcaacactctacatagcctaact 406  Q
    ||||||| |||||||||||| ||||||||||||||||||||| ||||||| |||||||||| |||||||||| |||||||||| ||||||  ||||||||    
T  22959584 tttctttgttctctagtacccccaccccaaacttagttggttacaaattctaatagcaaccacaaacttattatttagcaacattctacaatgcctaact 22959485  T
Q  407 c 407  Q
    |    
T  22959484 c 22959484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 307 - 407
Target Start/End: Original strand, 23828808 - 23828908
Alignment:
Q  307 tttctttattctctagtacctccaccccaaacttagttggttgcaaattccaatagcaaccccaaacttattgtttagcaacactctacatagcctaact 406  Q
    ||||||| |||||||||||| ||||||||||||||||||||| ||||||| |||||||||| |||||||||| |||||||||| ||||||  ||||||||    
T  23828808 tttctttgttctctagtacccccaccccaaacttagttggttacaaattctaatagcaaccacaaacttattatttagcaacattctacaatgcctaact 23828907  T
Q  407 c 407  Q
    |    
T  23828908 c 23828908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 307 - 408
Target Start/End: Complemental strand, 14968209 - 14968110
Alignment:
Q  307 tttctttattctctagtacctccaccccaaacttagttggttgcaaattccaatagcaaccccaaacttattgtttagcaacactctacatagcctaact 406  Q
    ||||||||| |||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| | ||||||  ||||||||    
T  14968209 tttctttat-ctctagtacc-ccaccccaaacttaattggttgcaaattccaatagcaaccccaaacttattatttagcaatattctacaatgcctaact 14968112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 315 - 408
Target Start/End: Complemental strand, 24408950 - 24408856
Alignment:
Q  315 ttctctagta-cctccaccccaaacttagttggttgcaaattccaatagcaaccccaaacttattgtttagcaacactctacatagcctaactca 408  Q
    |||||||||| || |||||||||||||| ||||||||||||||||| |||||||||||||||| | |||||||| | ||||||  ||||||||||    
T  24408950 ttctctagtatcccccaccccaaacttaattggttgcaaattccaagagcaaccccaaacttaatatttagcaaaattctacaatgcctaactca 24408856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 306 - 373
Target Start/End: Complemental strand, 22300695 - 22300628
Alignment:
Q  306 ttttctttattctctagtacctccaccccaaacttagttggttgcaaattccaatagcaaccccaaac 373  Q
    |||||||| |||||||||| | |||||||||||||||||||||||||||| |||||||||||| ||||    
T  22300695 ttttctttgttctctagtatccccaccccaaacttagttggttgcaaatttcaatagcaacccaaaac 22300628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 307 - 389
Target Start/End: Complemental strand, 25456044 - 25455960
Alignment:
Q  307 tttctttattctctagtacctccaccccaaacttagttggttgcaaattccaatagcaa--ccccaaacttattgtttagcaaca 389  Q
    ||||||| |||||||||||| ||||||||||||| ||  |||| |||||||||||||||  ||||||||||||| ||||||||||    
T  25456044 tttctttgttctctagtaccaccaccccaaacttggtaagttgtaaattccaatagcaaccccccaaacttattatttagcaaca 25455960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 343 - 415
Target Start/End: Original strand, 28109225 - 28109297
Alignment:
Q  343 ttggttgcaaattccaatagcaaccccaaacttattgtttagcaacactctacatagcctaactcaaatataa 415  Q
    ||||||||||||||||||| ||||| |||||||||| |||||||||| ||||||  | |||||||| ||||||    
T  28109225 ttggttgcaaattccaatatcaacctcaaacttattatttagcaacattctacaatgtctaactcagatataa 28109297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 149 - 192
Target Start/End: Complemental strand, 7836864 - 7836820
Alignment:
Q  149 tatttggattagtaggctacacaaaatttgag-taggcactccta 192  Q
    ||||||||| | |||||||||||||||||||| ||||||||||||    
T  7836864 tatttggataactaggctacacaaaatttgagttaggcactccta 7836820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 187; Significance: 1e-101; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 36 - 309
Target Start/End: Original strand, 26061022 - 26061296
Alignment:
Q  36 gtctacatattaccatatgcttgaaaagtttctaaacgtcaatcaaaatcaatgtcattacacactttgaggtctttaagatttataatggggcttaggt 135  Q
    ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||| |||||||||||    
T  26061022 gtctacatattaccatgcgcttgaaaagtttctaaacgtcaatcaaaatcaatgtcattacacactttgaggtctttaagggttataacggggcttaggt 26061121  T
Q  136 aaagatgggatattatttggattagtaggctacacaaaatttgag-taggcactcctaagaaaattaaagcatggattcaatcccacattcataccttga 234  Q
    |||| || |||||||||||||| ||||| ||||| |||||||||| ||||||||||||   |||||||||||||||||||||| | ||||||| ||||||    
T  26061122 aaaggtgtgatattatttggataagtagactacataaaatttgagttaggcactcctattgaaattaaagcatggattcaatcactcattcatcccttga 26061221  T
Q  235 aacaacaatttgtaaaggtactagagattacttgtaacttgttgggacaatcgagtttaaagttactcatatttt 309  Q
    ||||||||| ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |||||    
T  26061222 aacaacaatatgtaaaggtactagagaatatttgtaacttgttgggacaatcgagtttaaagttactcagatttt 26061296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 1 - 309
Target Start/End: Complemental strand, 53895291 - 53894984
Alignment:
Q  1 aatatgataagggttcacactcaatcaacgtgcaagtctacatattaccatatgcttgaaaagtttctaaacgtcaatcaaaatcaatgtcattacacac 100  Q
    |||||||||||||||||||| || || || |||| ||||||||||||||||| ||||||| ||||||||||||| |||||||||||||||||||||||||    
T  53895291 aatatgataagggttcacacacagtcgacatgcaggtctacatattaccatacgcttgaagagtttctaaacgttaatcaaaatcaatgtcattacacac 53895192  T
Q  101 tttgaggtctttaagatttataatggggcttaggtaaagatgggatattatttggattagtaggctacacaaaatttgagt-aggcactcctaagaaaat 199  Q
    |||||||||||| ||  |||||| ||||||||||||||| || |||| ||||||||| ||||||||||||||||||||||| ||| ||||||| ||||||    
T  53895191 tttgaggtctttcagggttataacggggcttaggtaaaggtgagataatatttggataagtaggctacacaaaatttgagtaaggaactcctacgaaaat 53895092  T
Q  200 taaagcatggattcaatcccacattcataccttgaaacaacaatttgtaaaggtactagagattacttgtaacttgttgggacaatcgagtttaaagtta 299  Q
    |||||||  |||| |||||| ||| ||  | |||||||||||| ||||||||||||||||||||| ||||||| | | ||||||||||||||| || |||    
T  53895091 taaagcaaagattaaatccctcatccaccctttgaaacaacaa-ttgtaaaggtactagagattatttgtaac-tatcgggacaatcgagtttgaaatta 53894994  T
Q  300 ctcatatttt 309  Q
    |||| |||||    
T  53894993 ctcagatttt 53894984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 37 - 204
Target Start/End: Original strand, 19861498 - 19861667
Alignment:
Q  37 tctacatattaccatatgcttgaaaagtttctaaacgtcaatcaaaatcaatgtcattacacactttgaggtctttaagatttataatggggcttaggta 136  Q
    |||||||||||||||||||||||||||||| |||| |||||||||||||||||||| | ||||||||||||||||||||  |||||| |||||||||||     
T  19861498 tctacatattaccatatgcttgaaaagtttttaaatgtcaatcaaaatcaatgtcaatgcacactttgaggtctttaagggttataacggggcttaggtg 19861597  T
Q  137 aagatgggatattatttggattagtaggctacacaaaa-tttgag-taggcactcctaagaaaattaaag 204  Q
    ||| ||||||| ||||||||| |||||||||||||||| |||||| |||||||||||| |||||||||||    
T  19861598 aaggtgggataatatttggataagtaggctacacaaaattttgagttaggcactcctatgaaaattaaag 19861667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 9 - 181
Target Start/End: Complemental strand, 56197845 - 56197674
Alignment:
Q  9 aagggttcacactcaatcaacgtgcaagtctacatattaccatatgcttgaaaagtttctaaacgtcaatcaaaatcaatgtcattacacactttgaggt 108  Q
    |||||||||||| || || || ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||    
T  56197845 aagggttcacacacagtcgacatgcaa-tctacatattaccatatgcttgaaaagtttctaaacgtcaatcaaaatcaatgtcaatgcacactttgaggt 56197747  T
Q  109 ctttaagatttataatggggcttaggtaaagatgggatattatttggattagtaggctacacaaaatttgagt 181  Q
    ||||||   |||||| ||||||||||| ||| ||||||| ||||||||| |||||| ||||||||||||||||    
T  56197746 ctttaaaggttataacggggcttaggtgaaggtgggataatatttggataagtaggttacacaaaatttgagt 56197674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 37 - 302
Target Start/End: Original strand, 3799007 - 3799278
Alignment:
Q  37 tctacatattaccatatgcttgaaaagtttctaaacgtcaatcaaaatcaatgtcattacacactttgaggtctttaagatttataatggggcttaggta 136  Q
    ||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||  |||||| ||| |||||||     
T  3799007 tctacatattatcataagcttgaaaagtttctaaacgtcaatcaaaatcaatgtcaatgcacactttgaggtctttaagggttataacgggacttaggtg 3799106  T
Q  137 aagatgggatattatttggattagtaggctacacaaaatttgag-taggcactcctaagaaaattaaagcatggattcaatcccacattcat--acc--t 231  Q
    ||| || |||||||||||||| |||||| ||||||||||||||| |||||||||||| | || ||||||||   |||||||||  |||||||  |||  |    
T  3799107 aaggtgagatattatttggataagtagggtacacaaaatttgagttaggcactcctacggaagttaaagcacaaattcaatccatcattcattcaccttt 3799206  T
Q  232 tgaaacaacaat--ttgtaaaggtactagagattacttgtaacttgttgggacaatcgagtttaaagttactc 302  Q
    || |||||| ||  ||| || |||||||||||||| || ||||   ||||||||||||||||| |||||||||    
T  3799207 tggaacaaccattcttgcaagggtactagagattatttataac-aattgggacaatcgagtttgaagttactc 3799278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 18 - 302
Target Start/End: Complemental strand, 15163205 - 15162919
Alignment:
Q  18 cactcaatcaacgtgcaagtctacatattaccatatgcttgaaaagtttctaaacgtcaatcaaaatcaatgtcattacacactttgaggtctttaagat 117  Q
    ||||||||||||||| || |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| ||      
T  15163205 cactcaatcaacgtgaaaatctacatattaccatacgcttgaaaagtttctaaacgtcaatcaaaatcaatgtcatttcacactttgaggactttcaggg 15163106  T
Q  118 ttataatggggcttaggtaaagatgggatattatttggattagtaggctacacaaaatttgag-taggcactcctaagaaaattaaagca-tggattcaa 215  Q
    ||||||  |||||||||  ||| || |||| ||||||||| |||||||||||||||||||||| || |||||| || | || | ||||||    ||||||    
T  15163105 ttataactgggcttaggcgaaggtgagataatatttggataagtaggctacacaaaatttgagttaagcactcatacggaagtgaaagcacaaaattcaa 15163006  T
Q  216 tcccacattcataccttgaaacaacaat--ttgtaaaggtactagagattacttgtaacttgttgggacaatcgagtttaaagttactc 302  Q
    |||  ||||||  | ||| |||||||||  |||| ||||||||||| | ||||||||||   ||||||||||||||||| |||||||||    
T  15163005 tccatcattca-cctttggaacaacaattattgtgaaggtactagataatacttgtaac-aattgggacaatcgagtttgaagttactc 15162919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 1 - 181
Target Start/End: Complemental strand, 39500708 - 39500528
Alignment:
Q  1 aatatgataagggttcacactcaatcaacgtgcaagtctacatattaccatatgcttgaaaagtttctaaacgtcaatcaaaatcaatgtcattacacac 100  Q
    ||||||| |||||||||||| ||||| || ||||| |||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| | |||||    
T  39500708 aatatgaaaagggttcacacacaatcgacatgcaa-tctacatattaccatacgcttgaaaagtttctaaacttcaatcaaaatcaatgtcaatgcacac 39500610  T
Q  101 tttgaggtctttaagatttataatggggcttaggtaaagatgggata-ttatttggattagtaggctacacaaaatttgagt 181  Q
    ||||||||| |||||  ||||||  |||||||||| ||| ||||||| |||||||||| |||||||||||||||||||||||    
T  39500609 tttgaggtcattaagggttataactgggcttaggtgaaggtgggatatttatttggataagtaggctacacaaaatttgagt 39500528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 9 - 177
Target Start/End: Original strand, 33411146 - 33411313
Alignment:
Q  9 aagggttcacactcaatcaacgtgcaagtctacatattaccatatgcttgaaaagtttctaaacgtcaatcaaaatcaatgtcattacacactttgaggt 108  Q
    |||||||||||| || || || ||||| |||||||||||||||| |||||||||||||||||||||| |||||||||||||||| | |||||||||||||    
T  33411146 aagggttcacacacagtcgacatgcaa-tctacatattaccataagcttgaaaagtttctaaacgtcgatcaaaatcaatgtcaatgcacactttgaggt 33411244  T
Q  109 ctttaagatttataatggggcttaggtaaagatgggatattatttggattagtaggctacacaaaattt 177  Q
    |||||||  || ||||||||||||||| ||| ||||||| ||||||||| |||||||||||||||||||    
T  33411245 ctttaagggttttaatggggcttaggtgaaggtgggataatatttggataagtaggctacacaaaattt 33411313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 9 - 181
Target Start/End: Original strand, 27678150 - 27678321
Alignment:
Q  9 aagggttcacactcaatcaacgtgcaagtctacatattaccatatgcttgaaaagtttctaaacgtcaatcaaaatcaatgtcattacacactttgaggt 108  Q
    |||||||||||| || || || ||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |||||||||||||    
T  27678150 aagggttcacacacagtcgacatgcaa-tctacatattaccataagcttgaaaagtttctaaacgtcaatcaaaatcaatgtcaatgcacactttgaggt 27678248  T
Q  109 ctttaagatttataatggggcttaggtaaagatgggatattatttggattagtaggctacacaaaatttgagt 181  Q
    |||||||  |||||| ||||||||||| ||| ||  ||| ||||||||| ||||||||||| |||||||||||    
T  27678249 ctttaagggttataagggggcttaggtgaaggtgaaataatatttggataagtaggctacataaaatttgagt 27678321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 9 - 176
Target Start/End: Original strand, 15430950 - 15431116
Alignment:
Q  9 aagggttcacactcaatcaacgtgcaagtctacatattaccatatgcttgaaaagtttctaaacgtcaatcaaaatcaatgtcattacacactttgaggt 108  Q
    |||||||||||| || || || |||||  ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |||| ||||||||    
T  15430950 aagggttcacacacagtcgacatgcaac-ctacatattaccatacgcttgaaaagtttctaaacgtcaatcaaaatcaatgtcaatgcacattttgaggt 15431048  T
Q  109 ctttaagatttataatggggcttaggtaaagatgggatattatttggattagtaggctacacaaaatt 176  Q
    ||| |||  |||||||||||||||||| ||| ||||||| ||||||||| ||||||||||||||||||    
T  15431049 cttaaaggattataatggggcttaggtgaaggtgggataatatttggataagtaggctacacaaaatt 15431116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 9 - 176
Target Start/End: Original strand, 15437564 - 15437730
Alignment:
Q  9 aagggttcacactcaatcaacgtgcaagtctacatattaccatatgcttgaaaagtttctaaacgtcaatcaaaatcaatgtcattacacactttgaggt 108  Q
    |||||||||||| || || || |||||  ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |||| ||||||||    
T  15437564 aagggttcacacacagtcgacatgcaac-ctacatattaccatacgcttgaaaagtttctaaacgtcaatcaaaatcaatgtcaatgcacattttgaggt 15437662  T
Q  109 ctttaagatttataatggggcttaggtaaagatgggatattatttggattagtaggctacacaaaatt 176  Q
    ||| |||  |||||||||||||||||| ||| ||||||| ||||||||| ||||||||||||||||||    
T  15437663 cttaaaggattataatggggcttaggtgaaggtgggataatatttggataagtaggctacacaaaatt 15437730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 308 - 432
Target Start/End: Original strand, 26061367 - 26061491
Alignment:
Q  308 ttctttattctctagtacctccaccccaaacttagttggttgcaaattccaatagcaaccccaaacttattgtttagcaacactctacatagcctaactc 407  Q
    |||||| ||||||||||||  ||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||  |||||||||||||||    
T  26061367 ttctttgttctctagtaccctcaccctaaacttagttggttgcaaatttcaatagcaaccccaaacttattgtttagcaacaccttacatagcctaactc 26061466  T
Q  408 aaatataatatttttgggtcaaatc 432  Q
    |||||||| |||||||||| |||||    
T  26061467 aaatataacatttttgggttaaatc 26061491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 37 - 192
Target Start/End: Original strand, 49637709 - 49637864
Alignment:
Q  37 tctacatattaccatatgcttgaaaagtttctaaacgtcaatcaaaatcaatgtcattacacactttgaggtctttaagatttataatggggcttaggta 136  Q
    |||||||||||||||| ||||||| |||||||| |||||||||||||||||||||| | ||||||||||||||||||||  | | || |||||||||||     
T  49637709 tctacatattaccatacgcttgaagagtttctatacgtcaatcaaaatcaatgtcaatgcacactttgaggtctttaagggtaacaacggggcttaggtg 49637808  T
Q  137 aagatgggatattatttggattagtaggctacacaaaatttgag-taggcactccta 192  Q
    ||| | ||||| ||||||||| |||||||||||||||||||||| ||||||||||||    
T  49637809 aaggt-ggataatatttggataagtaggctacacaaaatttgagttaggcactccta 49637864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 306 - 421
Target Start/End: Complemental strand, 53894902 - 53894788
Alignment:
Q  306 ttttctttattctctagtacctccaccccaaacttagttggttgcaaattccaatagcaaccccaaacttattgtttagcaacactctacatagcctaac 405  Q
    |||||||| |||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| |||||||||    
T  53894902 ttttctttgttctctagtacc-ccacctcaaacttagttggttgcaaattccaaaagcaaccccaaacttattgtttagcaacaccctacttagcctaac 53894804  T
Q  406 tcaaatataatatttt 421  Q
    |||||||||| |||||    
T  53894803 tcaaatataacatttt 53894788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 306 - 408
Target Start/End: Original strand, 15432593 - 15432695
Alignment:
Q  306 ttttctttattctctagtacctccaccccaaacttagttggttgcaaattccaatagcaaccccaaacttattgtttagcaacactctacatagcctaac 405  Q
    |||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| ||||||  |||||||    
T  15432593 ttttctttgttctctagtacccccaccccaaacttagttggttgcaaattccaatagcaaccccaaacttaatatttagcaacattctacaatgcctaac 15432692  T
Q  406 tca 408  Q
    |||    
T  15432693 tca 15432695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 307 - 408
Target Start/End: Complemental strand, 5672436 - 5672335
Alignment:
Q  307 tttctttattctctagtacctccaccccaaacttagttggttgcaaattccaatagcaaccccaaacttattgtttagcaacactctacatagcctaact 406  Q
    ||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| ||||||  ||||||||    
T  5672436 tttctttgttctctagtacccccaccccaaacttagttggttgcaaattccaatagcaaccccaaacttaatatttagcaacattctacaatgcctaact 5672337  T
Q  407 ca 408  Q
    ||    
T  5672336 ca 5672335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 328 - 414
Target Start/End: Complemental strand, 15161750 - 15161664
Alignment:
Q  328 ccaccccaaacttagttggttgcaaattccaatagcaaccccaaacttattgtttagcaacactctacatagcctaactcaaatata 414  Q
    |||||||||||||||||||||||||||||||||||||| | |||||||||||||||| |||||||||||| ||||||||||||||||    
T  15161750 ccaccccaaacttagttggttgcaaattccaatagcaatctcaaacttattgtttagtaacactctacattgcctaactcaaatata 15161664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 306 - 408
Target Start/End: Original strand, 27678555 - 27678657
Alignment:
Q  306 ttttctttattctctagtacctccaccccaaacttagttggttgcaaattccaatagcaaccccaaacttattgtttagcaacactctacatagcctaac 405  Q
    |||||||| |||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| | |||||||||| ||||||  |||||||    
T  27678555 ttttctttgttctctagtacccccaccccaaacttaattggttgcaaattccaatagcaaccccaaacttactatttagcaacattctacaatgcctaac 27678654  T
Q  406 tca 408  Q
    |||    
T  27678655 tca 27678657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 306 - 396
Target Start/End: Original strand, 3799390 - 3799480
Alignment:
Q  306 ttttctttattctctagtacctccaccccaaacttagttggttgcaaattccaatagcaaccccaaacttattgtttagcaacactctaca 396  Q
    |||||||| |||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| | |||||||||| ||||||    
T  3799390 ttttctttgttctctagtacccccaccccaaacttagttagttgcaaattccaatagcaaccccaaacttaatatttagcaacattctaca 3799480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 315 - 408
Target Start/End: Complemental strand, 19826187 - 19826095
Alignment:
Q  315 ttctctagtacctccaccccaaacttagttggttgcaaattccaatagcaaccccaaacttattgtttagcaacactctacatagcctaactca 408  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| ||||||  ||||||||||    
T  19826187 ttctctagtacc-ccaccccaaacttagttggttgcaaattccaatagcaaccccaaacttaatatttagcaacattctacactgcctaactca 19826095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 307 - 408
Target Start/End: Original strand, 49638065 - 49638164
Alignment:
Q  307 tttctttattctctagtacctccaccccaaacttagttggttgcaaattccaatagcaaccccaaacttattgtttagcaacactctacatagcctaact 406  Q
    ||||||||| |||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| |||| |  ||||||||    
T  49638065 tttctttat-ctctagtacc-ccaccccaaacttaattggttgcaaattccaatagcaaccccaaacttattatttagcaacattctataatgcctaact 49638162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 306 - 376
Target Start/End: Complemental strand, 56197443 - 56197373
Alignment:
Q  306 ttttctttattctctagtacctccaccccaaacttagttggttgcaaattccaatagcaaccccaaactta 376  Q
    |||||| | |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  56197443 ttttctatgttctctagtacccccaccccaaacttagttggttgcaaattccaatagcaaccccaaactta 56197373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 319 - 408
Target Start/End: Original strand, 19861769 - 19861858
Alignment:
Q  319 ctagtacctccaccccaaacttagttggttgcaaattccaatagcaaccccaaacttattgtttagcaacactctacatagcctaactca 408  Q
    |||||||| |||||||||||||||||||||||||||||||| ||||||| |||||||| | |||||||||| ||||||  ||||||||||    
T  19861769 ctagtacccccaccccaaacttagttggttgcaaattccaaaagcaacctcaaacttaatatttagcaacattctacaatgcctaactca 19861858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 315 - 408
Target Start/End: Complemental strand, 39500296 - 39500203
Alignment:
Q  315 ttctctagtacctccaccccaaacttagttggttgcaaattccaatagcaaccccaaacttattgtttagcaacactctacatagcctaactca 408  Q
    |||||||||| | |||||||||||||| |||||||||||||||||||||||||||||||||| | || ||||||| ||||||  ||||||||||    
T  39500296 ttctctagtatccccaccccaaacttaattggttgcaaattccaatagcaaccccaaacttaatattaagcaacattctacaatgcctaactca 39500203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 37 - 106
Target Start/End: Complemental strand, 19826490 - 19826421
Alignment:
Q  37 tctacatattaccatatgcttgaaaagtttctaaacgtcaatcaaaatcaatgtcattacacactttgag 106  Q
    |||||||||||| ||| ||||||||| ||||||||||||||||||||||||||||| | |||||||||||    
T  19826490 tctacatattactataagcttgaaaaatttctaaacgtcaatcaaaatcaatgtcaatgcacactttgag 19826421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 330 - 408
Target Start/End: Complemental strand, 56197384 - 56197306
Alignment:
Q  330 accccaaacttagttggttgcaaattccaatagcaaccccaaacttattgtttagcaacactctacatagcctaactca 408  Q
    |||||||||||| ||||||||||||| |||||||||||| ||||||| | |||||||||| ||||||  ||||||||||    
T  56197384 accccaaacttaattggttgcaaatttcaatagcaaccctaaacttaatatttagcaacattctacaatgcctaactca 56197306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 330 - 376
Target Start/End: Original strand, 22091341 - 22091387
Alignment:
Q  330 accccaaacttagttggttgcaaattccaatagcaaccccaaactta 376  Q
    |||| ||||||||||||||||||||| ||| ||||||| ||||||||    
T  22091341 accctaaacttagttggttgcaaatttcaaaagcaaccacaaactta 22091387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 174; Significance: 2e-93; HSPs: 2)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 5 - 301
Target Start/End: Complemental strand, 226286 - 225990
Alignment:
Q  5 tgataagggttcacactcaatcaacgtgcaagtctacatattaccatatgcttgaaaagtttctaaacgtcaatcaaaatcaatgtcattacacactttg 104  Q
    |||||||||||||||| || || || ||   ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  226286 tgataagggttcacacacagtcgacatgttggtctacatattacaatatgcttgaaaagtttctaaacgtcaatcaaaatcaatgtcattacacattttg 226187  T
Q  105 aggtctttaagatttataatggggcttaggtaaagatgggatattatttggattagtaggctacacaaaatttgag-taggcactcctaagaaaattaaa 203  Q
    |||||||||||  |||||| |||| |||||||||| |  |||||||||||||| ||||| |||||||||||||||| |||||||||||| ||||||||||    
T  226186 aggtctttaagggttataacggggtttaggtaaaggtatgatattatttggataagtagactacacaaaatttgagttaggcactcctaggaaaattaaa 226087  T
Q  204 gcatggattcaatcccacattcataccttgaaacaacaatttgtaaaggtactagagattacttgtaacttgttgggacaatcgagtttaaagttact 301  Q
    |||||||||||||||| |||||   |||||||||||||| |||||||||||||||||| || || ||||||||||||||||||||||||||| |||||    
T  226086 gcatggattcaatccctcattcgccccttgaaacaacaa-ttgtaaaggtactagagaatatttataacttgttgggacaatcgagtttaaaattact 225990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 308 - 421
Target Start/End: Complemental strand, 225902 - 225789
Alignment:
Q  308 ttctttattctctagtacctccaccccaaacttagttggttgcaaattccaatagcaaccccaaacttattgtttagcaacactctacatagcctaactc 407  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  225902 ttctttgttctctagtacctccaccccaaacttagttggttgcaaattccaatagcaaccccaaacttattgtttagcaacactctacatagcctaactc 225803  T
Q  408 aaatataatatttt 421  Q
    ||||| || |||||    
T  225802 aaataaaacatttt 225789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 174; Significance: 2e-93; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 5 - 301
Target Start/End: Complemental strand, 31983928 - 31983632
Alignment:
Q  5 tgataagggttcacactcaatcaacgtgcaagtctacatattaccatatgcttgaaaagtttctaaacgtcaatcaaaatcaatgtcattacacactttg 104  Q
    |||||||||||||||| || || || ||   ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  31983928 tgataagggttcacacacagtcgacatgttggtctacatattacaatatgcttgaaaagtttctaaacgtcaatcaaaatcaatgtcattacacattttg 31983829  T
Q  105 aggtctttaagatttataatggggcttaggtaaagatgggatattatttggattagtaggctacacaaaatttgag-taggcactcctaagaaaattaaa 203  Q
    |||||||||||  |||||| |||| |||||||||| |  |||||||||||||| ||||| |||||||||||||||| |||||||||||| ||||||||||    
T  31983828 aggtctttaagggttataacggggtttaggtaaaggtatgatattatttggataagtagactacacaaaatttgagttaggcactcctaggaaaattaaa 31983729  T
Q  204 gcatggattcaatcccacattcataccttgaaacaacaatttgtaaaggtactagagattacttgtaacttgttgggacaatcgagtttaaagttact 301  Q
    |||||||||||||||| |||||   |||||||||||||| |||||||||||||||||| || || ||||||||||||||||||||||||||| |||||    
T  31983728 gcatggattcaatccctcattcgccccttgaaacaacaa-ttgtaaaggtactagagaatatttataacttgttgggacaatcgagtttaaaattact 31983632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 1 - 302
Target Start/End: Original strand, 22223506 - 22223807
Alignment:
Q  1 aatatgataagggttcacactcaatcaacgtgcaagtctacatattaccatatgcttgaaaagtttctaaacgtcaatcaaaatcaatgtcattacacac 100  Q
    |||||||||||||||||||| || || ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  22223506 aatatgataagggttcacacacagtctacgtgcaggtctacatattaccatacgcttgaaaagtttctaaacgtcaatcaaaatcaatgtcattacacac 22223605  T
Q  101 tttgaggtctttaagatttataatggggcttaggtaaagatgggatattatttggattagtaggctacacaaaatttgag-taggcactcctaagaaaat 199  Q
    |||||||||||||||  |||||| ||||||||||||||| || |||| |||||| || |||||||||||||||||||||| |||| ||||||  ||||||    
T  22223606 tttgaggtctttaagggttataacggggcttaggtaaaggtgagataatatttgaataagtaggctacacaaaatttgagttagggactccttcgaaaat 22223705  T
Q  200 taaagcatggattcaatcccacattcataccttgaaacaacaatttgtaaaggtactagagattacttgtaacttgttgggacaatcgagtttaaagtta 299  Q
    |||||||  ||||||||||| ||||||  | |||||||||||||    |||| ||||||||| || ||||||| | ||||||||||||||||| || |||    
T  22223706 taaagcaaagattcaatccctcattcaccctttgaaacaacaatggtaaaagttactagagaatatttgtaac-tattgggacaatcgagtttgaaatta 22223804  T
Q  300 ctc 302  Q
    |||    
T  22223805 ctc 22223807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 1 - 302
Target Start/End: Original strand, 22229848 - 22230149
Alignment:
Q  1 aatatgataagggttcacactcaatcaacgtgcaagtctacatattaccatatgcttgaaaagtttctaaacgtcaatcaaaatcaatgtcattacacac 100  Q
    |||||||||||||||||||| || || ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  22229848 aatatgataagggttcacacacagtctacgtgcaggtctacatattaccatacgcttgaaaagtttctaaacgtcaatcaaaatcaatgtcattacacac 22229947  T
Q  101 tttgaggtctttaagatttataatggggcttaggtaaagatgggatattatttggattagtaggctacacaaaatttgag-taggcactcctaagaaaat 199  Q
    |||||||||||||||  |||||| ||||||||||||||| || |||| |||||| || |||||||||||||||||||||| |||| ||||||  ||||||    
T  22229948 tttgaggtctttaagggttataacggggcttaggtaaaggtgagataatatttgaataagtaggctacacaaaatttgagttagggactccttcgaaaat 22230047  T
Q  200 taaagcatggattcaatcccacattcataccttgaaacaacaatttgtaaaggtactagagattacttgtaacttgttgggacaatcgagtttaaagtta 299  Q
    |||||||  ||||||||||| ||||||  | |||||||||||||    |||| ||||||||| || ||||||| | ||||||||||||||||| || |||    
T  22230048 taaagcaaagattcaatccctcattcaccctttgaaacaacaatggtaaaagttactagagaatatttgtaac-tattgggacaatcgagtttgaaatta 22230146  T
Q  300 ctc 302  Q
    |||    
T  22230147 ctc 22230149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 12 - 206
Target Start/End: Original strand, 38249547 - 38249741
Alignment:
Q  12 ggttcacactcaatcaacgtgcaagtctacatattaccatatgcttgaaaagtttctaaacgtcaatcaaaatcaatgtcattacacactttgaggtctt 111  Q
    ||||||||| || || || ||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |||||||||| |||||    
T  38249547 ggttcacacacagtcgacatgcaa-tctacatattaccatacgcttgaaaagtttctaaacgtcaatcaaaatcaatgtcaatgcacactttgatgtctt 38249645  T
Q  112 taagatttataatggggcttaggtaaagatgggatattatttggattagtaggctacacaaaatttgag-taggcactcctaagaaaattaaagca 206  Q
    | ||  |||||| ||||||||||| ||| ||||||| ||||||||| |||||||||||||||||||||| |||||| ||||| | |||||||||||    
T  38249646 tcagggttataacggggcttaggtgaaggtgggataatatttggataagtaggctacacaaaatttgagttaggcattcctacggaaattaaagca 38249741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 308 - 421
Target Start/End: Complemental strand, 31983544 - 31983431
Alignment:
Q  308 ttctttattctctagtacctccaccccaaacttagttggttgcaaattccaatagcaaccccaaacttattgtttagcaacactctacatagcctaactc 407  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31983544 ttctttgttctctagtacctccaccccaaacttagttggttgcaaattccaatagcaaccccaaacttattgtttagcaacactctacatagcctaactc 31983445  T
Q  408 aaatataatatttt 421  Q
    ||||| || |||||    
T  31983444 aaataaaacatttt 31983431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 9 - 181
Target Start/End: Original strand, 33878422 - 33878594
Alignment:
Q  9 aagggttcacactcaatcaacgtgcaagtctacatattaccatatgcttgaaaagtttctaaacgtcaatcaaaatcaatgtcattacacactttgaggt 108  Q
    |||||||||||| || || || ||||| |||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| | |||||||||||||    
T  33878422 aagggttcacacacagtcgacatgcaa-tctacatattaccatacgcttgaaaagtttctaaacatcaatcaaaatcaatgtcaatgcacactttgaggt 33878520  T
Q  109 ctttaagatttataatggggcttaggtaaagatgggata-ttatttggattagtaggctacacaaaatttgagt 181  Q
    |||||||  |||||| ||||||||||| ||| ||||||| |||||||||| |||||||||||||||||||||||    
T  33878521 ctttaagggttataacggggcttaggtgaaggtgggatatttatttggataagtaggctacacaaaatttgagt 33878594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 37 - 263
Target Start/End: Complemental strand, 17930019 - 17929789
Alignment:
Q  37 tctacatattaccatatgcttgaaaagtttctaaacgtcaatcaaaatcaatgtcattacacactttgaggtctttaagatttataatggggcttaggta 136  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| |||  |||||| |||||||||||     
T  17930019 tctacatattaccatacgcttgaaaagtttctaaacgtcaatcaaaatcaatgtcaatgcacactttgaggtcttaaagggttataacggggcttaggtg 17929920  T
Q  137 aagatgggatattatttggattagtaggctacacaaaa-tttgag-taggcactccta-agaaaattaaagcatggattcaatcccacattcataccttg 233  Q
    ||| || |||| ||||||||| |||||||||||||||| |||||| ||||||||||||  |||  |||||||||  |||||||||  ||||||  | |||    
T  17929919 aaggtgagataatatttggataagtaggctacacaaaattttgagttaggcactcctacggaattttaaagcataaattcaatccatcattca-cctttg 17929821  T
Q  234 aaacaacaat--ttgtaaaggtactagagatt 263  Q
     |||||||||  |||||| |||||||||||||    
T  17929820 gaacaacaattcttgtaagggtactagagatt 17929789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 9 - 202
Target Start/End: Complemental strand, 12585288 - 12585095
Alignment:
Q  9 aagggttcacactcaatcaacgtgcaagtctacatattaccatatgcttgaaaagtttctaaacgtcaatcaaaatcaatgtcattacacactttgaggt 108  Q
    |||||||||||| || || || ||||| ||||||||||||| || ||||||||||||||||||||||||||||||||||||||  | |||||||||||||    
T  12585288 aagggttcacacacagtcgacatgcaa-tctacatattaccttacgcttgaaaagtttctaaacgtcaatcaaaatcaatgtcgatgcacactttgaggt 12585190  T
Q  109 ctttaagatttataatggggcttaggtaaagatgggatattatttggattagtaggctacacaaaatttgag-taggcactcctaagaaaattaa 202  Q
     || |||  |||||| ||||||||||| ||| ||||||| ||||||||| |||||||||||||||||||||| |||||| ||||| |||| ||||    
T  12585189 attaaagggttataacggggcttaggtgaaggtgggataatatttggataagtaggctacacaaaatttgagttaggcattcctacgaaagttaa 12585095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 37 - 202
Target Start/End: Original strand, 23945029 - 23945195
Alignment:
Q  37 tctacatattaccatatgcttgaaaagtttctaaacgtcaatcaaaatcaatgtcattacacactttgaggtctttaagatttataatggggcttaggta 136  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| |||  |||||| ||| |||||||     
T  23945029 tctacatattaccatacgcttgaaaagtttctaaacgtcaatcaaaatcaatgtcaatgcacactttgaggtcttaaagggttataacgggacttaggtg 23945128  T
Q  137 aagatgggatattatttggattagtaggctacacaaaatttgag-taggcactcctaagaaaattaa 202  Q
    ||| ||||||| ||||||||| |||||| ||||||||||||||| |||||| ||||| |||| ||||    
T  23945129 aaggtgggataatatttggataagtaggttacacaaaatttgagttaggcattcctacgaaagttaa 23945195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 37 - 181
Target Start/End: Complemental strand, 8910650 - 8910506
Alignment:
Q  37 tctacatattaccatatgcttgaaaagtttctaaacgtcaatcaaaatcaatgtcattacacactttgaggtctttaagatttataatggggcttaggta 136  Q
    |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| |||  |||||| |||||||||||     
T  8910650 tctatatattaccatacgcttgaaaagtttctaaacgtcaatcaaaatcaatgtcaatgcacactttgaggtcttaaagggttataacggggcttaggtg 8910551  T
Q  137 aagatgggatattatttggattagtaggctacacaaaatttgagt 181  Q
    ||| || |||| ||||||||| |||||||||||||||||||||||    
T  8910550 aaggtgtgataatatttggataagtaggctacacaaaatttgagt 8910506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 37 - 301
Target Start/End: Complemental strand, 23646066 - 23645798
Alignment:
Q  37 tctacatattaccatatgcttgaaaagtttctaaacgtcaatcaaaatcaatgtcattacacactttgaggtctttaagatttataatggggcttaggta 136  Q
    |||||||||||||||| |||| |||||||||||||||||||||||||||||||||| | |||||||||||||||| |||  || ||| |||||||||||     
T  23646066 tctacatattaccatacgcttaaaaagtttctaaacgtcaatcaaaatcaatgtcaatgcacactttgaggtcttaaagggttgtaacggggcttaggtg 23645967  T
Q  137 aagatgggatattatttggattagtaggctacacaaaatttgag-taggcactcctaagaaaattaaagca-tggattcaatcccacattcat--acc-- 230  Q
    ||| ||||||| ||||||||| ||||||||| |||||||||||| |||||| ||||| | || || |||||    |||||||||  |||||||  |||      
T  23645966 aaggtgggataatatttggataagtaggctatacaaaatttgagttaggcattcctacggaagtt-aagcacaaaattcaatccatcattcattcaccct 23645868  T
Q  231 ttgaaacaacaat--ttgtaaaggtactagagattacttgtaacttgttgggacaatcgagtttaaagttact 301  Q
    ||| |||||||||  ||| || |||||||||||||| || ||||   ||||||||||||||||||||||||||    
T  23645867 ttggaacaacaattcttgcaagggtactagagattatttataac---ttgggacaatcgagtttaaagttact 23645798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 9 - 181
Target Start/End: Original strand, 22175075 - 22175246
Alignment:
Q  9 aagggttcacactcaatcaacgtgcaagtctacatattaccatatgcttgaaaagtttctaaacgtcaatcaaaatcaatgtcattacacactttgaggt 108  Q
    |||||||||||| ||||| || ||||| |||||||||||||| | ||||||||||||||||||||||||||||||||||||||| | |||||||||||||    
T  22175075 aagggttcacacacaatcgacatgcaa-tctacatattaccacacgcttgaaaagtttctaaacgtcaatcaaaatcaatgtcaatgcacactttgaggt 22175173  T
Q  109 ctttaagatttataatggggcttaggtaaagatgggatattatttggattagtaggctacacaaaatttgagt 181  Q
     || |||  |||||| ||||||||||| ||| ||||| | ||||| ||| |||||||||||||| ||||||||    
T  22175174 tttaaagggttataacggggcttaggtgaaggtgggacaatatttcgataagtaggctacacaatatttgagt 22175246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 37 - 181
Target Start/End: Original strand, 25592711 - 25592855
Alignment:
Q  37 tctacatattaccatatgcttgaaaagtttctaaacgtcaatcaaaatcaa-tgtcattacacactttgaggtctttaagatttataatggggcttaggt 135  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| | |||||||||||||||| |||  ||||||  ||||||||||    
T  25592711 tctacatattaccataagcttgaaaagtttctaaacgtcaatcaaaatcaattgtcaatgcacactttgaggtcttaaagggttataacagggcttaggt 25592810  T
Q  136 aaagatgggatattatttggattagtaggctacacaaaatttgagt 181  Q
     ||| ||||||| ||||||||| |||||||||||||||||||||||    
T  25592811 gaaggtgggata-tatttggataagtaggctacacaaaatttgagt 25592855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 309 - 410
Target Start/End: Complemental strand, 17929664 - 17929563
Alignment:
Q  309 tctttattctctagtacctccaccccaaacttagttggttgcaaattccaatagcaaccccaaacttattgtttagcaacactctacatagcctaactca 408  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||  ||||||||||    
T  17929664 tctttattctctagtacccccaccccaaacttagttggttgcaaattccaatagcaaccccaaacttattatttagcaacattctacaatgcctaactca 17929565  T
Q  409 aa 410  Q
    ||    
T  17929564 aa 17929563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 306 - 408
Target Start/End: Complemental strand, 12584884 - 12584782
Alignment:
Q  306 ttttctttattctctagtacctccaccccaaacttagttggttgcaaattccaatagcaaccccaaacttattgtttagcaacactctacatagcctaac 405  Q
    |||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| ||||||  |||||||    
T  12584884 ttttctttgttctctagtacccccaccccaaacttagttggttgcaaattccaatagcaaccccaaacttaatatttagcaacaatctacaatgcctaac 12584785  T
Q  406 tca 408  Q
    |||    
T  12584784 tca 12584782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 306 - 408
Target Start/End: Complemental strand, 23645705 - 23645603
Alignment:
Q  306 ttttctttattctctagtacctccaccccaaacttagttggttgcaaattccaatagcaaccccaaacttattgtttagcaacactctacatagcctaac 405  Q
    |||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| ||||||  |||||||    
T  23645705 ttttctttgttctctagtacccccaccccaaacttagttggttgcaaattccaatagcaaccccaaacttaatatttagcaacattctacaatgcctaac 23645606  T
Q  406 tca 408  Q
    |||    
T  23645605 tca 23645603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 306 - 408
Target Start/End: Original strand, 33878846 - 33878948
Alignment:
Q  306 ttttctttattctctagtacctccaccccaaacttagttggttgcaaattccaatagcaaccccaaacttattgtttagcaacactctacatagcctaac 405  Q
    |||||||| ||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| ||||||  |||||||    
T  33878846 ttttctttgttctctagtaccctcaccccaaacttagttggttgcaaattccaatagcaaccccaaacttaatatttagcaacattctacaatgcctaac 33878945  T
Q  406 tca 408  Q
    |||    
T  33878946 tca 33878948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 308 - 421
Target Start/End: Original strand, 22223891 - 22223999
Alignment:
Q  308 ttctttattctctagtacctccaccccaaacttagttggttgcaaattccaatagcaaccccaaacttattgtttagcaacactctacatagcctaactc 407  Q
    ||||||||||||||    |||||||||||||||||||||||||||||||||| ||||||| ||| |||||||||||||||||| |||| |||||||||||    
T  22223891 ttctttattctcta----ctccaccccaaacttagttggttgcaaattccaaaagcaacctcaa-cttattgtttagcaacaccctacttagcctaactc 22223985  T
Q  408 aaatataatatttt 421  Q
    |||||||| |||||    
T  22223986 aaatataacatttt 22223999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 308 - 421
Target Start/End: Original strand, 22230233 - 22230341
Alignment:
Q  308 ttctttattctctagtacctccaccccaaacttagttggttgcaaattccaatagcaaccccaaacttattgtttagcaacactctacatagcctaactc 407  Q
    ||||||||||||||    |||||||||||||||||||||||||||||||||| ||||||| ||| |||||||||||||||||| |||| |||||||||||    
T  22230233 ttctttattctcta----ctccaccccaaacttagttggttgcaaattccaaaagcaacctcaa-cttattgtttagcaacaccctacttagcctaactc 22230327  T
Q  408 aaatataatatttt 421  Q
    |||||||| |||||    
T  22230328 aaatataacatttt 22230341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 308 - 396
Target Start/End: Original strand, 38249937 - 38250024
Alignment:
Q  308 ttctttattctctagtacctccaccccaaacttagttggttgcaaattccaatagcaaccccaaacttattgtttagcaacactctaca 396  Q
    |||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||   |||||||||| ||||||    
T  38249937 ttctctattctctagtacc-ccaccccaaacttaattggttgcaaattccaatagcaaccccaaacttaagatttagcaacattctaca 38250024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 306 - 389
Target Start/End: Original strand, 25593085 - 25593168
Alignment:
Q  306 ttttctttattctctagtacctccaccccaaacttagttggttgcaaattccaatagcaaccccaaacttattgtttagcaaca 389  Q
    |||||||| |||||||||| | |||||||||||||| |||||||||||||||||||||||||||||||||| | || |||||||    
T  25593085 ttttcttttttctctagtatccccaccccaaacttaattggttgcaaattccaatagcaaccccaaacttaatattaagcaaca 25593168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 306 - 396
Target Start/End: Original strand, 23945416 - 23945506
Alignment:
Q  306 ttttctttattctctagtacctccaccccaaacttagttggttgcaaattccaatagcaaccccaaacttattgtttagcaacactctaca 396  Q
    |||||||| |||||||||||| |||||||| ||||||||| ||| ||||||||||||||||| |||||||| | |||||||||| ||||||    
T  23945416 ttttctttgttctctagtaccgccaccccatacttagttgattgtaaattccaatagcaacctcaaacttaatatttagcaacattctaca 23945506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 315 - 408
Target Start/End: Original strand, 22175499 - 22175592
Alignment:
Q  315 ttctctagtacctccaccccaaacttagttggttgcaaattccaatagcaaccccaaacttattgtttagcaacactctacatagcctaactca 408  Q
    |||||||||  | |||||||||||||| ||| |||||||||| ||||||||||||||||||| | |||||||||| ||||||  ||||||||||    
T  22175499 ttctctagtgtccccaccccaaacttaattgtttgcaaattctaatagcaaccccaaacttaatatttagcaacattctacaatgcctaactca 22175592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 334 - 396
Target Start/End: Original strand, 7945814 - 7945876
Alignment:
Q  334 caaacttagttggttgcaaattccaatagcaaccccaaacttattgtttagcaacactctaca 396  Q
    |||||||| ||||||||||||||||| ||||||| ||||||||   || ||||||||||||||    
T  7945814 caaacttatttggttgcaaattccaaaagcaacctcaaacttaagtttcagcaacactctaca 7945876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 163; Significance: 6e-87; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 10 - 301
Target Start/End: Complemental strand, 49718640 - 49718346
Alignment:
Q  10 agggttcacactcaatcaacgtgcaagtctacatattaccatatgcttgaaaagtttctaaacgtcaatcaaaatcaatgtcattacacactttgaggtc 109  Q
    ||||||||||| ||||| || ||||| |||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| | ||||||||||||||    
T  49718640 agggttcacacacaatcgacatgcaaatctacatattaccatacgcttgaaaaatttctaaacgtcaatcaaaatcaatgtcaatgcacactttgaggtc 49718541  T
Q  110 tttaagatttataatggggcttaggtaaagatgggatattatttggattagtaggctacacaaaa-tttgag-taggcactcctaagaaaattaaagca- 206  Q
    || |||  |||||| ||||||||||| ||| ||||||| ||||||||| |||||||||||||||| |||||| |||||||||||| | || ||||||||     
T  49718540 ttaaagggttataacggggcttaggtgaaggtgggataatatttggataagtaggctacacaaaattttgagttaggcactcctacggaagttaaagcac 49718441  T
Q  207 tggattcaatcccacattcataccttgaaacaacaatttgtaaaggtactagagattacttgtaacttgttgggacaatcgagtttaaagttact 301  Q
       |||||||||| ||||||  ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||    
T  49718440 aaaattcaatccctcattcaccccttgaaacaacaatttgtaaaggtactagagaatatttgtaacttgttgggacaatcgagtttaaagttact 49718346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 1 - 302
Target Start/End: Original strand, 22454492 - 22454795
Alignment:
Q  1 aatatgataagggttcacactcaatcaacgtgcaagtctacatattaccatatgcttgaaaagtttctaaacgtcaatcaaaatcaatgtcattacacac 100  Q
    |||||||| | |||||||||||||||||| |||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| | |||||    
T  22454492 aatatgatcaaggttcacactcaatcaacatgcaggtctacatattaccatacgcttgaaaagtttctaaacatcaatcaaaatcaatgtcaatgcacac 22454591  T
Q  101 tttgaggtctttaagatttataatggggcttaggtaaagatgggatattatttggattagtaggctacacaaaa-tttgag-taggcactcctaagaaaa 198  Q
    ||||||||||| |||  |||||| ||||||||||| ||| ||||||| || |||||| | |||||||||||||| |||||| |||||| |||||   ||     
T  22454592 tttgaggtcttaaagggttataacggggcttaggtgaaggtgggataatacttggataaataggctacacaaaattttgagttaggcattcctatcgaag 22454691  T
Q  199 ttaaagcatggattcaatcccacattcataccttgaaacaacaat--ttgtaaaggtactagagattacttgtaacttgttgggacaatcgagtttaaag 296  Q
    ||||||||   ||||| |||  ||||||  | ||| |||||||||  |||||| |||||||||||||| ||| |||   ||||||||||||| ||| |||    
T  22454692 ttaaagcacaaattcattccatcattca-cctttggaacaacaattcttgtaagggtactagagattatttgaaac-aattgggacaatcgaatttgaag 22454789  T
Q  297 ttactc 302  Q
    ||||||    
T  22454790 ttactc 22454795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 307 - 428
Target Start/End: Complemental strand, 49718253 - 49718132
Alignment:
Q  307 tttctttattctctagtacctccaccccaaacttagttggttgcaaattccaatagcaaccccaaacttattgtttagcaacactctacatagcctaact 406  Q
    ||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  49718253 tttcttttttctctagtacccccaccccaaacttagttggttgcaaattccaatagcaaccccaaacttattgtttagcaacactctacatagtctaact 49718154  T
Q  407 caaatataatatttttgggtca 428  Q
    ||||||||| ||||||||||||    
T  49718153 caaatataacatttttgggtca 49718132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 37 - 181
Target Start/End: Original strand, 21019577 - 21019721
Alignment:
Q  37 tctacatattaccatatgcttgaaaagtttctaaacgtcaatcaaaatcaatgtcattacacactttgaggtctttaagatttataatggggcttaggta 136  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |  ||||||||||||||||||   |||||| |||||||||||     
T  21019577 tctacatattaccatatgcttgaaaagtttctaaacgtcaatcaaaatcaatgtcaatgtacactttgaggtctttaatggttataacggggcttaggtg 21019676  T
Q  137 aagatgggatattatttggattagtaggctacacaaaatttgagt 181  Q
    ||| ||||||| ||||||||| |||||||||||||||||||||||    
T  21019677 aaggtgggataatatttggataagtaggctacacaaaatttgagt 21019721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 37 - 202
Target Start/End: Complemental strand, 45940410 - 45940244
Alignment:
Q  37 tctacatattaccatatgcttgaaaagtttctaaacgtcaatcaaaatcaatgtcattacacactttgaggtctttaagatttataatggggcttaggta 136  Q
    |||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| | ||||||||||||||||||||  |||||| |||||||||||     
T  45940410 tctacatattaccataagcttgaaaagtttttaaacgtcaatcaaaatcaatgtcaatgcacactttgaggtctttaagggttataacggggcttaggtg 45940311  T
Q  137 aagatgggatattatttggattagtaggctacacaaaatttgag-taggcactcctaagaaaattaa 202  Q
    ||| ||||||| |||||| || |||||||||||||||||||||| |||||| ||||| |||| ||||    
T  45940310 aaggtgggataatatttgaataagtaggctacacaaaatttgagttaggcattcctacgaaagttaa 45940244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 37 - 181
Target Start/End: Original strand, 13640221 - 13640365
Alignment:
Q  37 tctacatattaccatatgcttgaaaagtttctaaacgtcaatcaaaatcaatgtcattacacactttgaggtctttaagatttataatggggcttaggta 136  Q
    |||||||||||||||| |||| |||||||||||||||||||||||||||||||||| | ||||||||||||||||| ||  ||||||  | ||||| ||     
T  13640221 tctacatattaccataagcttaaaaagtttctaaacgtcaatcaaaatcaatgtcaatgcacactttgaggtcttttagggttataacagagcttatgtg 13640320  T
Q  137 aagatgggatattatttggattagtaggctacacaaaatttgagt 181  Q
    ||| ||||||| ||||||||| ||||||||||| |||||||||||    
T  13640321 aaggtgggataatatttggataagtaggctacataaaatttgagt 13640365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 306 - 408
Target Start/End: Original strand, 21019944 - 21020046
Alignment:
Q  306 ttttctttattctctagtacctccaccccaaacttagttggttgcaaattccaatagcaaccccaaacttattgtttagcaacactctacatagcctaac 405  Q
    |||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| | |||||||||| ||||||  |||||||    
T  21019944 ttttctttgttctctagtacccccaccccaaacttagttggttgcaaattccaatagcaactccaaacttaatatttagcaacattctacaatgcctaac 21020043  T
Q  406 tca 408  Q
    |||    
T  21020044 tca 21020046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 306 - 408
Target Start/End: Complemental strand, 45940030 - 45939929
Alignment:
Q  306 ttttctttattctctagtacctccaccccaaacttagttggttgcaaattccaatagcaaccccaaacttattgtttagcaacactctacatagcctaac 405  Q
    |||||||| |||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| | |||||||||| ||||||  |||||||    
T  45940030 ttttctttgttctctagtacc-ccaccccaaacttaattggttgcaaattccaatagcaaccccaaacttaatatttagcaacattctacaatgcctaac 45939932  T
Q  406 tca 408  Q
    |||    
T  45939931 tca 45939929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 307 - 396
Target Start/End: Original strand, 22454875 - 22454963
Alignment:
Q  307 tttctttattctctagtacctccaccccaaacttagttggttgcaaattccaatagcaaccccaaacttattgtttagcaacactctaca 396  Q
    |||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| | |||||||||| |||||||||| ||||||    
T  22454875 tttctttattctctagtacccccaccccaaacttagttggttgcaatttccaatagcaa-cacaaacttattatttagcaacattctaca 22454963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 306 - 373
Target Start/End: Original strand, 13640581 - 13640648
Alignment:
Q  306 ttttctttattctctagtacctccaccccaaacttagttggttgcaaattccaatagcaaccccaaac 373  Q
    |||||||| |||||||||| | |||||||||||||||||||||||||||| |||||||||||| ||||    
T  13640581 ttttctttgttctctagtatccccaccccaaacttagttggttgcaaatttcaatagcaacccaaaac 13640648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 315 - 376
Target Start/End: Original strand, 21912652 - 21912713
Alignment:
Q  315 ttctctagtacctccaccccaaacttagttggttgcaaattccaatagcaaccccaaactta 376  Q
    |||||||||||| | |||||||||||||   ||||| | |||||| ||||||||||||||||    
T  21912652 ttctctagtacccctaccccaaacttagagtgttgctagttccaagagcaaccccaaactta 21912713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 153; Significance: 6e-81; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 4 - 302
Target Start/End: Original strand, 13810586 - 13810882
Alignment:
Q  4 atgataagggttcacactcaatcaacgtgcaagtctacatattaccatatgcttgaaaagtttctaaacgtcaatcaaaatcaatgtcattacacacttt 103  Q
    |||||||||||||||||  | || || | ||||||||||||||||||||  |||||||||| ||||||||||||||||||||||||||||||||||||||    
T  13810586 atgataagggttcacac--agtcgacatacaagtctacatattaccatactcttgaaaagtctctaaacgtcaatcaaaatcaatgtcattacacacttt 13810683  T
Q  104 gaggtctttaagatttataatggggcttaggtaaagatgggatattatttggattagtaggctacacaaaatttgag-taggcactcctaagaaaattaa 202  Q
    ||||||||| ||  |||||| | | ||||||||||| ||||||| ||||||||| |||||||||||||||||||||| |||||||||||| | |||||||    
T  13810684 gaggtctttcagggttataacgtgtcttaggtaaaggtgggataatatttggataagtaggctacacaaaatttgagttaggcactcctacggaaattaa 13810783  T
Q  203 agcatggattcaatcccacattcataccttgaaacaacaatttgtaaaggtactagagattacttgtaacttgttgggacaatcgagtttaaagttactc 302  Q
    |||| | |||||||||| ||||||  | |||||||||||| |||||||||||||||||| || |||||||||||| ||| |||||||||| || ||||||    
T  13810784 agcacgaattcaatccctcattcaccctttgaaacaacaa-ttgtaaaggtactagagaatatttgtaacttgttaggataatcgagtttgaaattactc 13810882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 151 - 309
Target Start/End: Complemental strand, 16222904 - 16222745
Alignment:
Q  151 tttggattagtaggctacacaaaatttgagt-aggcactcctaagaaaattaaagcatggattcaatcccacattcataccttgaaacaacaatttgtaa 249  Q
    ||||||| ||||||||||||||||||||||| ||||||||||| | || |||||||||||||||||||||||||||| ||||||||| ||||||||||||    
T  16222904 tttggataagtaggctacacaaaatttgagttaggcactcctacggaagttaaagcatggattcaatcccacattcacaccttgaaataacaatttgtaa 16222805  T
Q  250 aggtactagagattacttgtaacttgttgggacaatcgagtttaaagttactcatatttt 309  Q
    |||||||||||| || |||||||||||||||||||||||||||||||||||||| |||||    
T  16222804 aggtactagagaatatttgtaacttgttgggacaatcgagtttaaagttactcagatttt 16222745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 9 - 203
Target Start/End: Complemental strand, 22256271 - 22256077
Alignment:
Q  9 aagggttcacactcaatcaacgtgcaagtctacatattaccatatgcttgaaaagtttctaaacgtcaatcaaaatcaatgtcattacacactttgaggt 108  Q
    |||||||||||| || || || ||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |||||||||||||    
T  22256271 aagggttcacacacagtcgacatgcaa-tctacatattaccataagcttgaaaagtttctaaacgtcaatcaaaatcaatgtcaatgcacactttgaggt 22256173  T
Q  109 ctttaagatttataatggggcttaggtaaagatgggatattatttggattagtaggctacacaaaatttgag-taggcactcctaagaaaattaaa 203  Q
    |||||||  |||||| ||||||||||| |    |||||||||||||||| |||||||||||||||||||||| |||||||||||| |||| |||||    
T  22256172 ctttaagggttataacggggcttaggtgactgagggatattatttggataagtaggctacacaaaatttgagttaggcactcctacgaaagttaaa 22256077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 9 - 302
Target Start/End: Complemental strand, 20595714 - 20595420
Alignment:
Q  9 aagggttcacactcaatcaacgtgcaagtctacatattaccatatgcttgaaaagtttctaaacgtcaatcaaaatcaat-gtcattacacactttgagg 107  Q
    |||||||||||| || || || ||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| | ||||||||||||    
T  20595714 aagggttcacacacagtcgacatgcaa-tctacatattaccataagcttgaaaagtttctaaacgtcaatcaaaatcaattgtcaatgcacactttgagg 20595616  T
Q  108 tctttaagatttataatggggcttaggtaaagatgggatattatttggattagtaggctacacaaaatttgag-taggcactcctaagaaaattaaagca 206  Q
    |||| |||  |||||| ||||||||||| ||| ||||||| ||||||||| |||||||||||||||||||||| ||||||||||||  ||| ||||||||    
T  20595615 tcttaaagggttataacggggcttaggtgaaggtgggataatatttggataagtaggctacacaaaatttgagttaggcactcctacaaaagttaaagca 20595516  T
Q  207 tggattcaatcccacattcataccttgaaacaacaat--ttgtaaaggtactagagattacttgtaacttgttgggacaatcgagtttaaagttactc 302  Q
       |||  ||||  ||||||  | ||| |||||||||  ||| || |||||||||||||| || ||| |  ||||||||||||||||| |||||||||    
T  20595515 caaatttgatccatcattca-cctttggaacaacaattcttgcaagggtactagagattatttctaa-taattgggacaatcgagtttgaagttactc 20595420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 9 - 181
Target Start/End: Original strand, 45288322 - 45288493
Alignment:
Q  9 aagggttcacactcaatcaacgtgcaagtctacatattaccatatgcttgaaaagtttctaaacgtcaatcaaaatcaatgtcattacacactttgaggt 108  Q
    |||||||||||| ||||| || ||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |||||||||||||    
T  45288322 aagggttcacacacaatcgacatgcaa-tctacatattaccatacgcttgaaaagtttctaaacgtcaatcaaaatcaatgtcaatgcacactttgaggt 45288420  T
Q  109 ctttaagatttataatggggcttaggtaaagatgggatattatttggattagtaggctacacaaaatttgagt 181  Q
    ||| |||  |||||| || |||||||| ||| ||||||| ||||||||| |||||||||||||||||||||||    
T  45288421 cttaaagggttataacggagcttaggtgaaggtgggataatatttggataagtaggctacacaaaatttgagt 45288493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 9 - 181
Target Start/End: Complemental strand, 4544747 - 4544577
Alignment:
Q  9 aagggttcacactcaatcaacgtgcaagtctacatattaccatatgcttgaaaagtttctaaacgtcaatcaaaatcaatgtcattacacactttgaggt 108  Q
    |||||||||||| || || || ||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |||||||||||||    
T  4544747 aagggttcacacacagtcgacatgcaa-tctacatattaccataagcttgaaaagtttctaaacgtcaatcaaaatcaatgtcaatgcacactttgaggt 4544649  T
Q  109 ctttaagatttataatggggcttaggtaaagatgggatattatttggattagtaggctacacaaaatttgagt 181  Q
    ||| |||  |||||| ||||||||||| ||| || |||| ||||||||| | |||||||||||||||||||||    
T  4544648 cttaaagggttataacggggcttaggtgaaggtgagata-tatttggataaataggctacacaaaatttgagt 4544577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 14 - 204
Target Start/End: Original strand, 9274224 - 9274415
Alignment:
Q  14 ttcacactcaatcaacgtgcaagtctacatattaccatatgcttgaaaagtttctaaacgtcaatcaaaatcaatgtcattacacactttgaggtcttta 113  Q
    ||||||| || || || |||| ||||||||||||||||| ||||||| ||||||||||| ||||||||||||||| ||| |||||||||||||||||||     
T  9274224 ttcacacacagtcgacatgcaggtctacatattaccatacgcttgaagagtttctaaacatcaatcaaaatcaatatcactacacactttgaggtctttc 9274323  T
Q  114 agatttataatggggcttaggtaaagatgggatattatttggattagtaggctacacaaaatttgag-taggcactcctaagaaaattaaag 204  Q
    ||  |||| | ||| ||||||| ||| ||||||| ||||||||| |||||||||||||||||||||| ||||||||| || |||| ||||||    
T  9274324 agggttatcacgggtcttaggtgaaggtgggataatatttggataagtaggctacacaaaatttgagttaggcactcatacgaaagttaaag 9274415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 306 - 408
Target Start/End: Original strand, 26137340 - 26137442
Alignment:
Q  306 ttttctttattctctagtacctccaccccaaacttagttggttgcaaattccaatagcaaccccaaacttattgtttagcaacactctacatagcctaac 405  Q
    |||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| ||||||  |||||||    
T  26137340 ttttctttgttctctagtacccccaccccaaacttagttggttgcaaattccaatagcaaccccaaacttaatatttagcaacattctacaatgcctaac 26137439  T
Q  406 tca 408  Q
    |||    
T  26137440 tca 26137442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 307 - 407
Target Start/End: Original strand, 45288731 - 45288831
Alignment:
Q  307 tttctttattctctagtacctccaccccaaacttagttggttgcaaattccaatagcaaccccaaacttattgtttagcaacactctacatagcctaact 406  Q
    ||||||| |||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| | |||||||||| ||||||  ||||||||    
T  45288731 tttctttgttctctagtacccccaccccaaacttaattggttgcaaattccaatagcaaccccaaacttaatatttagcaacattctacaatgcctaact 45288830  T
Q  407 c 407  Q
    |    
T  45288831 c 45288831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 310 - 420
Target Start/End: Original strand, 9274594 - 9274704
Alignment:
Q  310 ctttattctctagtacctccaccccaaacttagttggttgcaaattccaatagcaaccccaaacttattgtttagcaacactctacatagcctaactcaa 409  Q
    |||| ||||||| ||||  |||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| ||||||  ||||||||||     
T  9274594 ctttgttctctattaccctcaccccaaacttagttggttgcaaattccaatagcaaccccaaacttattatttaacaacattctacaatgcctaactcat 9274693  T
Q  410 atataatattt 420  Q
    |||||| ||||    
T  9274694 atataacattt 9274704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 315 - 408
Target Start/End: Complemental strand, 4544340 - 4544247
Alignment:
Q  315 ttctctagtacctccaccccaaacttagttggttgcaaattccaatagcaaccccaaacttattgtttagcaacactctacatagcctaactca 408  Q
    |||||||||| | |||||||||||||| |||||||||||||||||||||||||||||||||| | |||||||||| ||||||  ||||||||||    
T  4544340 ttctctagtatccccaccccaaacttaattggttgcaaattccaatagcaaccccaaacttaatatttagcaacattctacaatgcctaactca 4544247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 315 - 408
Target Start/End: Complemental strand, 20595296 - 20595203
Alignment:
Q  315 ttctctagtacctccaccccaaacttagttggttgcaaattccaatagcaaccccaaacttattgtttagcaacactctacatagcctaactca 408  Q
    |||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| | || |||||||  |||||  ||||||||||    
T  20595296 ttctctagtacccccaccccaaacttaattggttgcaaattccaatagcaaccccaaacttaatattaagcaacatcctacaatgcctaactca 20595203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 315 - 408
Target Start/End: Complemental strand, 22255854 - 22255761
Alignment:
Q  315 ttctctagtacctccaccccaaacttagttggttgcaaattccaatagcaaccccaaacttattgtttagcaacactctacatagcctaactca 408  Q
    |||||||||| | |||||||||||||| |||||||||||||||||||||||||||||||||| | ||||| |||| ||||||  ||||||||||    
T  22255854 ttctctagtatccccaccccaaacttaattggttgcaaattccaatagcaaccccaaacttaatatttagtaacattctacaatgcctaactca 22255761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 365 - 432
Target Start/End: Complemental strand, 16222637 - 16222570
Alignment:
Q  365 accccaaacttattgtttagcaacactctacatagcctaactcaaatataatatttttgggtcaaatc 432  Q
    |||||||||||||| ||||||||||  |||||||||||||||||||||||| ||||||||||||||||    
T  16222637 accccaaacttattatttagcaacaacctacatagcctaactcaaatataacatttttgggtcaaatc 16222570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 365 - 421
Target Start/End: Original strand, 13810964 - 13811020
Alignment:
Q  365 accccaaacttattgtttagcaacactctacatagcctaactcaaatataatatttt 421  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||| |||||    
T  13810964 accccaaacttattgtttagtaacactctacatagcctaactcaaatataacatttt 13811020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 37 - 86
Target Start/End: Original strand, 26137252 - 26137301
Alignment:
Q  37 tctacatattaccatatgcttgaaaagtttctaaacgtcaatcaaaatca 86  Q
    |||||||||||||||| |||||||| ||||||||||||||||||||||||    
T  26137252 tctacatattaccataagcttgaaaggtttctaaacgtcaatcaaaatca 26137301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 250 - 302
Target Start/End: Original strand, 9274462 - 9274513
Alignment:
Q  250 aggtactagagattacttgtaacttgttgggacaatcgagtttaaagttactc 302  Q
    |||||||||||| ||||||||||| ||||||||||||||||||||||||||||    
T  9274462 aggtactagagaatacttgtaact-gttgggacaatcgagtttaaagttactc 9274513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 308 - 341
Target Start/End: Complemental strand, 16222659 - 16222626
Alignment:
Q  308 ttctttattctctagtacctccaccccaaactta 341  Q
    ||||||||||||||||||||||||||||||||||    
T  16222659 ttctttattctctagtacctccaccccaaactta 16222626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 304 - 375
Target Start/End: Original strand, 42780853 - 42780924
Alignment:
Q  304 tattttctttattctctagtacctccaccccaaacttagttggttgcaaattccaatagcaaccccaaactt 375  Q
    |||||||||  |||||||||||| | |||||||||||||   ||||| | |||||| |||||||||||||||    
T  42780853 tattttcttctttctctagtacccctaccccaaacttagaatgttgctagttccaaaagcaaccccaaactt 42780924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 150; Significance: 4e-79; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 1 - 309
Target Start/End: Original strand, 99364 - 99670
Alignment:
Q  1 aatatgataagggttcacactcaatcaacgtgcaagtctacatattaccatatgcttgaaaagtttctaaacgtcaatcaaaatcaatgtcattacacac 100  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||  |||||||||||| ||||||| ||||||||| |||||||||||||||    
T  99364 aatatgataagggttcacactcaatcaacgtgcaaatctacatattaccatacacttgaaaagtttgtaaacgttaatcaaaattaatgtcattacacac 99463  T
Q  101 tttgaggtctttaagatttataatggggcttaggtaaagatgggatattatttggattagtaggctacacaaaatttgag-taggcactcctaagaaaat 199  Q
    |||||||||||||||  ||||||   ||||||||||||| ||||||| ||||||||| |||||||||||||||||||||| ||| ||||||||   ||||    
T  99464 tttgaggtctttaagggttataa-caggcttaggtaaaggtgggataatatttggataagtaggctacacaaaatttgagttagacactcctacagaaat 99562  T
Q  200 taaagcatggattcaatcccacattcataccttgaaacaacaatttgtaaaggtactagagattacttgtaacttgttgggacaatcgagtttaaagtta 299  Q
    |||| |||||||| |||||| ||||||    |||||||||||| | ||| ||||||||||||  | ||||||| ||||||||||||||||||| || |||    
T  99563 taaaacatggatttaatccctcattcaccttttgaaacaacaa-tggtacaggtactagagaacatttgtaac-tgttgggacaatcgagtttgaattta 99660  T
Q  300 ctcatatttt 309  Q
    |||| |||||    
T  99661 ctcagatttt 99670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 307 - 405
Target Start/End: Original strand, 99718 - 99815
Alignment:
Q  307 tttctttattctctagtacctccaccccaaacttagttggttgcaaattccaatagcaaccccaaacttattgtttagcaacactctacatagcctaac 405  Q
    ||||||| |||||||||||| | |||||||| |||||||||||||||||||||||||||||||||||||||  |||||||||| ||||||  |||||||    
T  99718 tttctttgttctctagtacc-caaccccaaatttagttggttgcaaattccaatagcaaccccaaacttatcatttagcaacattctacaatgcctaac 99815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 149; Significance: 1e-78; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 10 - 309
Target Start/End: Complemental strand, 11058844 - 11058542
Alignment:
Q  10 agggttcacactcaatcaacgtgcaagtctacatattaccatatgcttgaaaagtttctaaacgtcaatcaaaatcaatgtcattacacactttgaggtc 109  Q
    ||||||||| | || || || ||||| |||||||||||||||| ||||||||| ||||||||||||||| ||||||||| ||| | |||||||| |||||    
T  11058844 agggttcactcacagtcgacatgcaaatctacatattaccatacgcttgaaaaatttctaaacgtcaataaaaatcaatatcaatgcacactttaaggtc 11058745  T
Q  110 tttaagatttataatggggcttaggtaaagatgggatattatttggattagtaggctacacaaaa-tttgag-taggc--actcctaagaaaattaaagc 205  Q
    ||||||  |||||| ||||||||||| ||| ||||||| ||||||||| |||||||||||||||| |||||| |||||  ||||||| | || ||||||     
T  11058744 tttaagggttataacggggcttaggtgaaggtgggataatatttggataagtaggctacacaaaattttgagttaggccaactcctacggaagttaaaga 11058645  T
Q  206 atggattcaatcccacattcataccttgaaacaacaatttgtaaaggtactagagattacttgtaacttgttgggacaatcgagtttaaagttactcata 305  Q
    |||||||||||||| ||||||  |||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| |    
T  11058644 atggattcaatccctcattca-cccttgaaataacaatttgtaaaggtactagagattatttgtaacttgttgggacaatcgagtttaaatttactcaaa 11058546  T
Q  306 tttt 309  Q
    ||||    
T  11058545 tttt 11058542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 308 - 432
Target Start/End: Complemental strand, 11058451 - 11058327
Alignment:
Q  308 ttctttattctctagtacctccaccccaaacttagttggttgcaaattccaatagcaaccccaaacttattgtttagcaacactctacatagcctaactc 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  11058451 ttctttattctctagtacctccaccccaaacttagttggttgcaaattccaatagcaaccccaaacttattgtttagcaacaccctacatagcctaactc 11058352  T
Q  408 aaatataatatttttgggtcaaatc 432  Q
    |||||||||||||||||||||||||    
T  11058351 aaatataatatttttgggtcaaatc 11058327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 9 - 206
Target Start/End: Complemental strand, 24237370 - 24237172
Alignment:
Q  9 aagggttcacactcaatcaacgtgcaagtctacatattaccatatgcttgaaaagtttctaaacgtcaatcaaaatcaatgtcattacacactttgaggt 108  Q
    |||||||||||| || || || ||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |||||||||||||    
T  24237370 aagggttcacacacagtcgacatgcaa-tctacatattaccataagcttgaaaagtttctaaacgtcaatcaaaatcaatgtcaatgcacactttgaggt 24237272  T
Q  109 ctttaagatttataatggggcttaggtaaagatgggata-ttatttggattagtaggctacacaaaatttgag-taggcactcctaagaaaattaaagca 206  Q
    |||||||  |||||| ||||||||||| ||| ||||||| |||||||||| |||||||||||||||||||||| |||||||||||| |||| ||||||||    
T  24237271 ctttaagggttataacggggcttaggtgaaggtgggatatttatttggataagtaggctacacaaaatttgagttaggcactcctacgaaagttaaagca 24237172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 37 - 202
Target Start/End: Complemental strand, 45456089 - 45455923
Alignment:
Q  37 tctacatattaccatatgcttgaaaagtttctaaacgtcaatcaaaatcaatgtcattacacactttgaggtctttaagatttataatggggcttaggta 136  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| |||  |||||| |||||||||||     
T  45456089 tctacatattaccataagcttgaaaagtttctaaacgtcaatcaaaatcaatgtcaatgcacactttgaggtcttaaagggttataacggggcttaggtg 45455990  T
Q  137 aagatgggatattatttggattagtaggctacacaaaatttgag-taggcactcctaagaaaattaa 202  Q
    ||| ||||||| ||||||||| |||||||||||||||||||||| |||||| ||||| |||||||||    
T  45455989 aaggtgggataatatttggataagtaggctacacaaaatttgagttaggcattcctacgaaaattaa 45455923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 9 - 206
Target Start/End: Original strand, 25957547 - 25957747
Alignment:
Q  9 aagggttcacactcaatcaacgtgcaagtctacatattaccatatgcttgaaaagtttctaaacgtcaatcaaaatcaatgtcattacacactttgaggt 108  Q
    |||||||||||| || || || ||||| |||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| | |||||||||||||    
T  25957547 aagggttcacacacagtcgacatgcaa-tctacatattaccataagctggaaaagtttctaaacgtcaatcaaaatcaatgtcaatgcacactttgaggt 25957645  T
Q  109 ctttaagatttataatggggcttaggtaaagatgggata---ttatttggattagtaggctacacaaaatttgag-taggcactcctaagaaaattaaag 204  Q
    |||||||  |||||| ||||||||||| ||| |||||||   |||||||||| |||||||||||||||||||||| | |||||||||| |||| ||||||    
T  25957646 ctttaagggttataacggggcttaggtgaaggtgggatatatttatttggataagtaggctacacaaaatttgagttgggcactcctacgaaagttaaag 25957745  T
Q  205 ca 206  Q
    ||    
T  25957746 ca 25957747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 9 - 181
Target Start/End: Original strand, 1504501 - 1504672
Alignment:
Q  9 aagggttcacactcaatcaacgtgcaagtctacatattaccatatgcttgaaaagtttctaaacgtcaatcaaaatcaatgtcattacacactttgaggt 108  Q
    |||||||||||| || || || ||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |||||||||||||    
T  1504501 aagggttcacacacagtcgacatgcaa-tctacatattaccatacgcttgaaaagtttctaaacgtcaatcaaaatcaatgtcaatgcacactttgaggt 1504599  T
Q  109 ctttaagatttataatggggcttaggtaaagatgggatattatttggattagtaggctacacaaaatttgagt 181  Q
    ||||||   |||||| ||||||||||| ||| || |||| ||||||||| |||||||||||||||||||||||    
T  1504600 ctttaacggttataacggggcttaggtgaaggtgagataatatttggataagtaggctacacaaaatttgagt 1504672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 12 - 181
Target Start/End: Complemental strand, 25873016 - 25872848
Alignment:
Q  12 ggttcacactcaatcaacgtgcaagtctacatattaccatatgcttgaaaagtttctaaacgtcaatcaaaatcaatgtcattacacactttgaggtctt 111  Q
    ||||||||| ||||| || ||||| || ||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |||| |||||||||||    
T  25873016 ggttcacacacaatcgacatgcaa-tccacatattaccataagcttgaaaagtttctaaacgtcaatcaaaatcaatgtcaatgcacattttgaggtctt 25872918  T
Q  112 taagatttataatggggcttaggtaaagatgggatattatttggattagtaggctacacaaaatttgagt 181  Q
     |||  |||||| ||||||||||| ||| ||||||| ||||||||| |||||||||||||||||||||||    
T  25872917 aaagggttataacggggcttaggtgaaggtgggataatatttggataagtaggctacacaaaatttgagt 25872848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 37 - 181
Target Start/End: Original strand, 13973024 - 13973168
Alignment:
Q  37 tctacatattaccatatgcttgaaaagtttctaaacgtcaatcaaaatcaatgtcattacacactttgaggtctttaagatttataatggggcttaggta 136  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| |||  |||||| |||||||||||     
T  13973024 tctacatattaccatacgcttgaaaagtttctaaacgtcaatcaaaatcaatgtcagttcacactttgaggtcttaaagggttataacggggcttaggtg 13973123  T
Q  137 aagatgggatattatttggattagtaggctacacaaaatttgagt 181  Q
    ||| ||||||| ||||||||| ||||||||||| |||||||||||    
T  13973124 aaggtgggataatatttggataagtaggctacaaaaaatttgagt 13973168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 9 - 181
Target Start/End: Original strand, 9186527 - 9186697
Alignment:
Q  9 aagggttcacactcaatcaacgtgcaagtctacatattaccatatgcttgaaaagtttctaaacgtcaatcaaaatcaatgtcattacacactttgaggt 108  Q
    |||||||||||| || || || ||||| |||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| | ||  |||||||||    
T  9186527 aagggttcacacacagtcgacatgcaa-tctacatattaccatacgcttggaaagtttctaaacgtcaatcaaaatcaatgtcaatgcag-ctttgaggt 9186624  T
Q  109 ctttaagatttataatggggcttaggtaaagatgggatattatttggattagtaggctacacaaaatttgagt 181  Q
    |||||||  |||||| ||||||||||| |||  |||||| ||||||||| |||||||||||||||||||||||    
T  9186625 ctttaagggttataacggggcttaggtgaaggcgggataatatttggataagtaggctacacaaaatttgagt 9186697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 9 - 181
Target Start/End: Original strand, 31428621 - 31428792
Alignment:
Q  9 aagggttcacactcaatcaacgtgcaagtctacatattaccatatgcttgaaaagtttctaaacgtcaatcaaaatcaatgtcattacacactttgaggt 108  Q
    |||||||||||| || || || ||||| |||||||||||||||| ||||||||||||||||||| ||||||||||||||| ||| | |||||||||||||    
T  31428621 aagggttcacacacagtcgacatgcaa-tctacatattaccatacgcttgaaaagtttctaaacatcaatcaaaatcaatatcaatgcacactttgaggt 31428719  T
Q  109 ctttaagatttataatggggcttaggtaaagatgggatattatttggattagtaggctacacaaaatttgagt 181  Q
    ||| |||  ||||||  |||||||||| ||| ||| ||| ||||||||| |||||||||||||||||||||||    
T  31428720 cttaaagggttataacagggcttaggtgaaggtggaataatatttggataagtaggctacacaaaatttgagt 31428792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 315 - 408
Target Start/End: Original strand, 9186939 - 9187032
Alignment:
Q  315 ttctctagtacctccaccccaaacttagttggttgcaaattccaatagcaaccccaaacttattgtttagcaacactctacatagcctaactca 408  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |||||| |||||||||||    
T  9186939 ttctctagtacccccaccccaaacttagttggttgcaaattccaatagcaaccccaaacttaatatttagcaacattctacaaagcctaactca 9187032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 306 - 408
Target Start/End: Complemental strand, 25872623 - 25872521
Alignment:
Q  306 ttttctttattctctagtacctccaccccaaacttagttggttgcaaattccaatagcaaccccaaacttattgtttagcaacactctacatagcctaac 405  Q
    |||||||| ||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| ||||||  |||||||    
T  25872623 ttttctttgttctctagtaccctcaccccaaacttagttggttgcaaattccaatagcaaccccaaacttaatatttagcaacattctacaatgcctaac 25872524  T
Q  406 tca 408  Q
    |||    
T  25872523 tca 25872521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 306 - 410
Target Start/End: Original strand, 13973401 - 13973505
Alignment:
Q  306 ttttctttattctctagtacctccaccccaaacttagttggttgcaaattccaatagcaaccccaaacttattgtttagcaacactctacatagcctaac 405  Q
    |||||||| |||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| | |||||||| | ||||||  |||||||    
T  13973401 ttttctttgttctctagtacccccaccccaaacttagttggttgcaaattccaataacaaccccaaacttaatatttagcaatattctacaatgcctaac 13973500  T
Q  406 tcaaa 410  Q
    |||||    
T  13973501 tcaaa 13973505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 306 - 396
Target Start/End: Complemental strand, 45455722 - 45455632
Alignment:
Q  306 ttttctttattctctagtacctccaccccaaacttagttggttgcaaattccaatagcaaccccaaacttattgtttagcaacactctaca 396  Q
    |||||||| |||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |||| ||||||    
T  45455722 ttttctttgttctctagtacccccacccgaaacttagttggttgcaaattccaatagcaaccccaaacttattatttagtaacattctaca 45455632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 315 - 408
Target Start/End: Original strand, 16789015 - 16789108
Alignment:
Q  315 ttctctagtacctccaccccaaacttagttggttgcaaattccaatagcaaccccaaacttattgtttagcaacactctacatagcctaactca 408  Q
    |||||||||| | |||||||||||||| |||||||||||||||||||||||||||||||||| | |||||||||| ||||||  ||||||||||    
T  16789015 ttctctagtatccccaccccaaacttaattggttgcaaattccaatagcaaccccaaacttaatatttagcaacattctacaatgcctaactca 16789108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 315 - 408
Target Start/End: Complemental strand, 30151109 - 30151016
Alignment:
Q  315 ttctctagtacctccaccccaaacttagttggttgcaaattccaatagcaaccccaaacttattgtttagcaacactctacatagcctaactca 408  Q
    |||||||||| | |||||||||||||| |||||||||||||||||||||||||||||||||| | |||||||||| ||||||  ||||||||||    
T  30151109 ttctctagtatccccaccccaaacttaattggttgcaaattccaatagcaaccccaaacttaatatttagcaacattctacaatgcctaactca 30151016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 315 - 408
Target Start/End: Original strand, 31429026 - 31429119
Alignment:
Q  315 ttctctagtacctccaccccaaacttagttggttgcaaattccaatagcaaccccaaacttattgtttagcaacactctacatagcctaactca 408  Q
    |||||||||| | |||||||||||||| |||||||||||||||||||||||||||||||||| | |||||||||| ||||||  ||||||||||    
T  31429026 ttctctagtatccccaccccaaacttaattggttgcaaattccaatagcaaccccaaacttaatatttagcaacattctacaatgcctaactca 31429119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 306 - 408
Target Start/End: Original strand, 1504900 - 1505001
Alignment:
Q  306 ttttctttattctctagtacctccaccccaaacttagttggttgcaaattccaatagcaaccccaaacttattgtttagcaacactctacatagcctaac 405  Q
    |||||||| |||||||||||| |||||||||||||| |||||||||||||||| ||||||||||||||||| | |||||||||| ||| ||  |||||||    
T  1504900 ttttctttgttctctagtacc-ccaccccaaacttaattggttgcaaattccattagcaaccccaaacttaatatttagcaacattcttcaatgcctaac 1504998  T
Q  406 tca 408  Q
    |||    
T  1504999 tca 1505001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 311 - 408
Target Start/End: Original strand, 25957971 - 25958068
Alignment:
Q  311 tttattctctagtacctccaccccaaacttagttggttgcaaattccaatagcaaccccaaacttattgtttagcaacactctacatagcctaactca 408  Q
    |||||||||||||| | |||||||||||||| |||||||||||||||||||||||||||||||||| | || |||||||  |||||  ||||||||||    
T  25957971 tttattctctagtatccccaccccaaacttaattggttgcaaattccaatagcaaccccaaacttaatattaagcaacatcctacaatgcctaactca 25958068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 315 - 408
Target Start/End: Complemental strand, 24236944 - 24236851
Alignment:
Q  315 ttctctagtacctccaccccaaacttagttggttgcaaattccaatagcaaccccaaacttattgtttagcaacactctacatagcctaactca 408  Q
    |||||||||| | |||||||||||||| |||||||||||||||| ||||||||||||||||| | || ||||||| ||||||  ||||||||||    
T  24236944 ttctctagtatccccaccccaaacttaattggttgcaaattccattagcaaccccaaacttaatattaagcaacattctacaatgcctaactca 24236851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 40 - 88
Target Start/End: Complemental strand, 18823873 - 18823825
Alignment:
Q  40 acatattaccatatgcttgaaaagtttctaaacgtcaatcaaaatcaat 88  Q
    |||| |||||||||| |||||||| |||||| |||| ||||||||||||    
T  18823873 acattttaccatatgtttgaaaagattctaaccgtcgatcaaaatcaat 18823825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 126; Significance: 8e-65; HSPs: 2)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 37 - 302
Target Start/End: Complemental strand, 28239 - 27974
Alignment:
Q  37 tctacatattaccatatgcttgaaaagtttctaaacgtcaatcaaaatcaatgtcattacacactttgaggtctttaagatttataatggggcttaggta 136  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||  ||||||||||||||||||     
T  28239 tctacatattaccataagcttgaaaagtttctaaacgtcaatcaaaatcaatgtcaattcacactttgaggtctttaagggttataatggggcttaggtg 28140  T
Q  137 aagatgggatattatttggattagtaggctacacaaaatttgag-taggcactcctaagaaaattaaagcatggattcaatcccacattcataccttgaa 235  Q
    ||| ||||||| |||||| || |||||||||||||||||||||| ||| |||||||| |||| ||||||||   |||||||||  ||||||  | ||| |    
T  28139 aaggtgggataatatttgaataagtaggctacacaaaatttgagttagacactcctacgaaagttaaagca-caattcaatccatcattca-cctttgga 28042  T
Q  236 acaacaat--ttgtaaaggtactagagattacttgtaacttgttgggacaatcgagtttaaagttactc 302  Q
    ||||||||  |||||| |||||||||||||| |||||||   ||||||||||||||||| |||||||||    
T  28041 acaacaattcttgtaagggtactagagattatttgtaac-aattgggacaatcgagtttgaagttactc 27974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 309 - 405
Target Start/End: Complemental strand, 27848 - 27752
Alignment:
Q  309 tctttattctctagtacctccaccccaaacttagttggttgcaaattccaatagcaaccccaaacttattgtttagcaacactctacatagcctaac 405  Q
    ||||| |||||||||| | ||||||||||| |||||| |||||||||||||||||||| ||||||||| | ||||| |||| ||||||  |||||||    
T  27848 tctttgttctctagtatccccaccccaaacatagttgattgcaaattccaatagcaacgccaaacttaatatttagaaacattctacaatgcctaac 27752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0360 (Bit Score: 113; Significance: 4e-57; HSPs: 2)
Name: scaffold0360
Description:

Target: scaffold0360; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 308 - 432
Target Start/End: Complemental strand, 4564 - 4440
Alignment:
Q  308 ttctttattctctagtacctccaccccaaacttagttggttgcaaattccaatagcaaccccaaacttattgtttagcaacactctacatagcctaactc 407  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  4564 ttctttgttctctagtacctccaccccaaacttagttggttgcaaatttcaatagcaaccccaaacttattgtttagcaacaccctacatagcctaactc 4465  T
Q  408 aaatataatatttttgggtcaaatc 432  Q
    |||||||||||||||||||||||||    
T  4464 aaatataatatttttgggtcaaatc 4440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0360; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 4 - 60
Target Start/End: Complemental strand, 1468 - 1412
Alignment:
Q  4 atgataagggttcacactcaatcaacgtgcaagtctacatattaccatatgcttgaa 60  Q
    ||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||    
T  1468 atgataagggttcacactcaatcaacgtgcaggtctatatattaccatacgcttgaa 1412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0321 (Bit Score: 109; Significance: 1e-54; HSPs: 3)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 37 - 181
Target Start/End: Original strand, 4059 - 4203
Alignment:
Q  37 tctacatattaccatatgcttgaaaagtttctaaacgtcaatcaaaatcaatgtcattacacactttgaggtctttaagatttataatggggcttaggta 136  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||  |||||| |||||||||||     
T  4059 tctacatattaccataagcttgaaaagtttctaaacgtcaatcaaaatcaatgtcaatgcacactttgaggtctttaagggttataacggggcttaggtg 4158  T
Q  137 aagatgggatattatttggattagtaggctacacaaaatttgagt 181  Q
    ||| ||||||||||||||||| |||||||||||||||||||||||    
T  4159 aaggtgggatattatttggataagtaggctacacaaaatttgagt 4203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0321; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 315 - 406
Target Start/End: Original strand, 4437 - 4528
Alignment:
Q  315 ttctctagtacctccaccccaaacttagttggttgcaaattccaatagcaaccccaaacttattgtttagcaacactctacatagcctaact 406  Q
    |||||||||||| | |||||||||||| |||||||||||||||||||||||||||||||||| | |||||||||| | ||||  ||||||||    
T  4437 ttctctagtacccctaccccaaacttaattggttgcaaattccaatagcaaccccaaacttaatatttagcaacattttacaatgcctaact 4528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0321; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 250 - 302
Target Start/End: Original strand, 4280 - 4331
Alignment:
Q  250 aggtactagagattacttgtaacttgttgggacaatcgagtttaaagttactc 302  Q
    ||||||||||||||| || ||||  |||||||||||||||||| |||||||||    
T  4280 aggtactagagattatttataaca-gttgggacaatcgagtttgaagttactc 4331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048 (Bit Score: 95; Significance: 2e-46; HSPs: 4)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 9 - 197
Target Start/End: Complemental strand, 28087 - 27898
Alignment:
Q  9 aagggttcacactcaatcaacgtgcaagtctacatattaccatatgcttgaaaagtttctaaacgtcaatcaaaatcaat-gtcattacacactttgagg 107  Q
    |||||||||||| || || || ||||| |||||||||||||||| |||||||| |||||||||||||||||||||||| | |||| | ||||||||||||    
T  28087 aagggttcacacacagtcgacatgcaa-tctacatattaccataagcttgaaaggtttctaaacgtcaatcaaaatcatttgtcaatgcacactttgagg 27989  T
Q  108 tctttaagatttataatggggcttaggtaaagatgggatattatttggattagtaggctacacaaaatttgag-taggcactcctaagaaa 197  Q
    ||||||||  |||||| ||||||||||| ||| ||||||| ||||||||| |||||||||||||||||||||| |||||| ||||| ||||    
T  27988 tctttaagggttataacggggcttaggtgaaggtgggataatatttggataagtaggctacacaaaatttgagttaggcattcctacgaaa 27898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 306 - 408
Target Start/End: Complemental strand, 23494 - 23392
Alignment:
Q  306 ttttctttattctctagtacctccaccccaaacttagttggttgcaaattccaatagcaaccccaaacttattgtttagcaacactctacatagcctaac 405  Q
    |||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| ||||||  |||||||    
T  23494 ttttctttgttctctagtacccccaccccaaacttagttggttgcaaattccaatagcaaccccaaacttaatatttagcaacattctacaatgcctaac 23395  T
Q  406 tca 408  Q
    |||    
T  23394 tca 23392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 9 - 111
Target Start/End: Complemental strand, 23851 - 23749
Alignment:
Q  9 aagggttcacactcaatcaacgtgcaagtctacatattaccatatgcttgaaaagtttctaaacgtcaatcaaaatcaa-tgtcattacacactttgagg 107  Q
    |||||||||||| || || || ||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| | ||||||||||||    
T  23851 aagggttcacacacagtcgacatgcaa-tctacatattaccataagcttgaaaagtttctaaacgtcaatcaaaatcaattgtcaatgcacactttgagg 23753  T
Q  108 tctt 111  Q
    ||||    
T  23752 tctt 23749  T

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Target: scaffold0048; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 315 - 376
Target Start/End: Complemental strand, 27664 - 27603
Alignment:
Q  315 ttctctagtacctccaccccaaacttagttggttgcaaattccaatagcaaccccaaactta 376  Q
    |||||||||| | |||||||||||||| ||||||||||||||||||||||||||||||||||    
T  27664 ttctctagtatccccaccccaaacttaattggttgcaaattccaatagcaaccccaaactta 27603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0126 (Bit Score: 87; Significance: 1e-41; HSPs: 2)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 39 - 181
Target Start/End: Original strand, 786 - 928
Alignment:
Q  39 tacatattaccatatgcttgaaaagtttctaaacgtcaatcaaaatcaatgtcattacacactttgaggtctttaagatttataatggggcttaggtaaa 138  Q
    |||||||||||||| ||||||||||||||||||| ||||||||||||||||||| | |||||||||||||||| |||  |||||| ||||||||||| ||    
T  786 tacatattaccatacgcttgaaaagtttctaaacatcaatcaaaatcaatgtcaatgcacactttgaggtcttaaagggttataacggggcttaggtgaa 885  T
Q  139 gatgggatattatttggattagtaggctacacaaaatttgagt 181  Q
    | ||  ||| ||||||||| |||||||||||||||||||||||    
T  886 ggtgcaataatatttggataagtaggctacacaaaatttgagt 928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0126; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 306 - 408
Target Start/End: Original strand, 1174 - 1277
Alignment:
Q  306 ttttctttattctctagtacctccacccc-aaacttagttggttgcaaattccaatagcaaccccaaacttattgtttagcaacactctacatagcctaa 404  Q
    |||||||| |||||||||||| ||||||| |||||||||||||||||||||||||||||||||| ||||||| | ||||| |||| ||||||  ||||||    
T  1174 ttttctttgttctctagtacccccacccccaaacttagttggttgcaaattccaatagcaaccctaaacttaatatttagtaacattctacaatgcctaa 1273  T
Q  405 ctca 408  Q
    ||||    
T  1274 ctca 1277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0084 (Bit Score: 87; Significance: 1e-41; HSPs: 2)
Name: scaffold0084
Description:

Target: scaffold0084; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 12 - 206
Target Start/End: Complemental strand, 28392 - 28200
Alignment:
Q  12 ggttcacactcaatcaacgtgcaagtctacatattaccatatgcttgaaaagtttctaaacgtcaatcaaaatcaa-tgtcattacacactttgaggtct 110  Q
    ||||||||| ||||| || ||||| |||| ||||||||||| |||||||||||||||||||||||||||||||||| ||||| | |||||||||||||||    
T  28392 ggttcacacacaatcgacatgcaa-tctagatattaccataagcttgaaaagtttctaaacgtcaatcaaaatcaattgtcaatgcacactttgaggtct 28294  T
Q  111 ttaagatttataatggggcttaggtaaagatgggatattatttggattagtaggctacacaaaatttgag-taggcactcctaagaaaattaaagca 206  Q
    |||||  |||||| |||||| |||| ||| || ||   ||||||||| ||||||||||| |||||||||| |||||||||||| |||| ||||||||    
T  28293 ttaagggttataacggggctaaggtgaaggtgaga---tatttggataagtaggctacaaaaaatttgagttaggcactcctacgaaagttaaagca 28200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0084; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 315 - 378
Target Start/End: Complemental strand, 27894 - 27831
Alignment:
Q  315 ttctctagtacctccaccccaaacttagttggttgcaaattccaatagcaaccccaaacttatt 378  Q
    |||||| ||| | |||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  27894 ttctcttgtatccccaccccaaacttaattggttgcaaattccaatagcaaccccaaacttatt 27831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0270 (Bit Score: 85; Significance: 2e-40; HSPs: 2)
Name: scaffold0270
Description:

Target: scaffold0270; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 37 - 181
Target Start/End: Original strand, 1275 - 1419
Alignment:
Q  37 tctacatattaccatatgcttgaaaagtttctaaacgtcaatcaaaatcaatgtcattacacactttgaggtctttaagatttataatggggcttaggta 136  Q
    |||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| | ||||| |||||||||| ||   |||||| |||||||||||     
T  1275 tctacatattaccataagcttgaaaagtttctaaacatcaatcaaaatcaatgtcaatgcacacattgaggtcttaaaaggttataaaggggcttaggtg 1374  T
Q  137 aagatgggatattatttggattagtaggctacacaaaatttgagt 181  Q
    ||| ||||||| ||||||||| |||||||||||||||||| ||||    
T  1375 aaggtgggataatatttggataagtaggctacacaaaattcgagt 1419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0270; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 315 - 408
Target Start/End: Original strand, 1658 - 1751
Alignment:
Q  315 ttctctagtacctccaccccaaacttagttggttgcaaattccaatagcaaccccaaacttattgtttagcaacactctacatagcctaactca 408  Q
    ||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| ||||||  ||||||||||    
T  1658 ttctctaatacccccaccccaaacttagttggttgcaaattccaatagcaaccccaaacttaatatttagcaacattctacaatgcctaactca 1751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0214 (Bit Score: 85; Significance: 2e-40; HSPs: 4)
Name: scaffold0214
Description:

Target: scaffold0214; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 37 - 192
Target Start/End: Complemental strand, 12473 - 12318
Alignment:
Q  37 tctacatattaccatatgcttgaaaagtttctaaacgtcaatcaaaatcaatgtcattacacactttgaggtctttaagatttataatggggcttaggta 136  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |   |||||| |||||||||||     
T  12473 tctacatattaccatacgcttgaaaagtttctaaacgtcaatcaaaatcaatgtcaatgcacactttgaggtctttcaaggttataacggggcttaggtt 12374  T
Q  137 aagatgggatattatttggattagtaggctacacaaaatttgag-taggcactccta 192  Q
    ||| | ||| | |||||| || |||||||||||||||||||||| ||||||||||||    
T  12373 aaggt-ggagaatatttgaataagtaggctacacaaaatttgagttaggcactccta 12318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0214; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 37 - 192
Target Start/End: Complemental strand, 26489 - 26334
Alignment:
Q  37 tctacatattaccatatgcttgaaaagtttctaaacgtcaatcaaaatcaatgtcattacacactttgaggtctttaagatttataatggggcttaggta 136  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |   |||||| |||||||||||     
T  26489 tctacatattaccatacgcttgaaaagtttctaaacgtcaatcaaaatcaatgtcaatgcacactttgaggtcttttatggttataacggggcttaggtt 26390  T
Q  137 aagatgggatattatttggattagtaggctacacaaaatttgag-taggcactccta 192  Q
    ||| | ||| | |||||| || |||||||||||||||||||||| ||||||||||||    
T  26389 aaggt-ggagaatatttgaataagtaggctacacaaaatttgagttaggcactccta 26334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0214; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 307 - 408
Target Start/End: Complemental strand, 26132 - 26033
Alignment:
Q  307 tttctttattctctagtacctccaccccaaacttagttggttgcaaattccaatagcaaccccaaacttattgtttagcaacactctacatagcctaact 406  Q
    ||||||||| |||||| ||| |||||||||||||| || |||||||||| |||||||||||||||||||||| |||||||||| ||||||  ||||||||    
T  26132 tttctttat-ctctagcacc-ccaccccaaacttaattagttgcaaatttcaatagcaaccccaaacttattatttagcaacattctacaatgcctaact 26035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0214; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 307 - 406
Target Start/End: Complemental strand, 12109 - 12012
Alignment:
Q  307 tttctttattctctagtacctccaccccaaacttagttggttgcaaattccaatagcaaccccaaacttattgtttagcaacactctacatagcctaact 406  Q
    ||||||||| |||||||||| |||||||||||| | || |||||||||| |||||||||||||||||||||| |||||||||| ||||||  ||||||||    
T  12109 tttctttat-ctctagtacc-ccaccccaaactcaattagttgcaaatttcaatagcaaccccaaacttattatttagcaacattctacaatgcctaact 12012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 71; Significance: 5e-32; HSPs: 2)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 28 - 181
Target Start/End: Original strand, 49523 - 49676
Alignment:
Q  28 acgtgcaagtctacatattaccatatgcttgaaaagtttctaaacgtcaatcaaaatcaatgtcattacacacttt-gaggtctttaagatttataatgg 126  Q
    ||||||||||||||||||||||||| |||||||||||||||| |||||||||||| |  ||||||| ||||| |||  |||||||| ||  |||||| ||    
T  49523 acgtgcaagtctacatattaccatacgcttgaaaagtttctagacgtcaatcaaagtacatgtcatcacacattttaaaggtcttt-agggttataacgg 49621  T
Q  127 ggcttaggtaaagatgggatattatttggattagtaggctacacaaaatttgagt 181  Q
     | |||||||||| ||||||| ||||||||| |||| ||||||||||||||||||    
T  49622 agtttaggtaaaggtgggataatatttggataagtaagctacacaaaatttgagt 49676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 315 - 411
Target Start/End: Original strand, 49901 - 49997
Alignment:
Q  315 ttctctagtacctccaccccaaacttagttggttgcaaattccaatagcaaccccaaacttattgtttagcaacactctacatagcctaactcaaat 411  Q
    |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| |  ||||||||||||||||||||    
T  49901 ttctctagcacccccaccccaaacttagttggttgcaaattccaatagcaaccccaaacttatttcttagcaatatcctacatagcctaactcaaat 49997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 309 - 387
Target Start/End: Complemental strand, 13030 - 12952
Alignment:
Q  309 tctttattctctagtacctccaccccaaacttagttggttgcaaattccaatagcaaccccaaacttattgtttagcaa 387  Q
    ||||| |||||||||| | |||||||||||||||| |||||||||||||||||||||||||||||||| | ||||||||    
T  13030 tctttgttctctagtatccccaccccaaacttagtcggttgcaaattccaatagcaaccccaaacttaatatttagcaa 12952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0037 (Bit Score: 54; Significance: 7e-22; HSPs: 3)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 316 - 408
Target Start/End: Original strand, 96767 - 96860
Alignment:
Q  316 tctctagtacctccaccccaaacttagttggttgcaaattccaatagcaaccccaaactt-attgtttagcaacactctacatagcctaactca 408  Q
    ||||||||||| |||||||||||||| ||||||||| ||||||||||||||||||||||| | | |||||||||| ||||||  ||||||||||    
T  96767 tctctagtacccccaccccaaacttaattggttgcatattccaatagcaaccccaaacttaaatttttagcaacattctacaatgcctaactca 96860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0037; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 9 - 78
Target Start/End: Original strand, 96112 - 96180
Alignment:
Q  9 aagggttcacactcaatcaacgtgcaagtctacatattaccatatgcttgaaaagtttctaaacgtcaat 78  Q
    |||||||||||| || || || ||||| |||||||||||||||| |||||||||||||||||||||||||    
T  96112 aagggttcacacacagtcgacatgcaa-tctacatattaccatacgcttgaaaagtttctaaacgtcaat 96180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0037; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 96 - 181
Target Start/End: Original strand, 96182 - 96267
Alignment:
Q  96 cacactttgaggtctttaagatttataatggggcttaggtaaagatgggatattatttggattagtaggctacacaaaatttgagt 181  Q
    ||||| |||||||||| |||  |||||| ||| ||||||| ||| ||||||| ||||||||| |||||||||||||| | ||||||    
T  96182 cacacattgaggtcttaaagggttataacgggacttaggtgaaggtgggataatatttggataagtaggctacacaacaattgagt 96267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1785 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: scaffold1785
Description:

Target: scaffold1785; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 316 - 376
Target Start/End: Complemental strand, 340 - 280
Alignment:
Q  316 tctctagtacctccaccccaaacttagttggttgcaaattccaatagcaaccccaaactta 376  Q
    ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||    
T  340 tctctagtacccccaccccaaacttaattggttgcaaattccaatagcaaccccaaactta 280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1785; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 84 - 181
Target Start/End: Complemental strand, 587 - 491
Alignment:
Q  84 tcaatgtcattacacactttgaggtctttaagatttataatggggcttaggtaaagatgggatattatttggattagtaggctacacaaaatttgagt 181  Q
    ||||||||| | |||||||||||||||| ||| || |||| |||| | |||| ||| ||| ||| ||||||||| |||||||||||||| ||||||||    
T  587 tcaatgtcaatgcacactttgaggtcttaaaggtt-ataacggggatcaggtgaaggtggaataatatttggataagtaggctacacaacatttgagt 491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 316 - 376
Target Start/End: Complemental strand, 62950 - 62890
Alignment:
Q  316 tctctagtacctccaccccaaacttagttggttgcaaattccaatagcaaccccaaactta 376  Q
    ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||    
T  62950 tctctagtacccccaccccaaacttaattggttgcaaattccaatagcaaccccaaactta 62890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 84 - 181
Target Start/End: Complemental strand, 63197 - 63101
Alignment:
Q  84 tcaatgtcattacacactttgaggtctttaagatttataatggggcttaggtaaagatgggatattatttggattagtaggctacacaaaatttgagt 181  Q
    ||||||||| | |||||||||||||||| ||| || |||| |||| | |||| ||| ||| ||| ||||||||| |||||||||||||| ||||||||    
T  63197 tcaatgtcaatgcacactttgaggtcttaaaggtt-ataacggggatcaggtgaaggtggaataatatttggataagtaggctacacaacatttgagt 63101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0520 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0520
Description:

Target: scaffold0520; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 339 - 408
Target Start/End: Original strand, 10660 - 10729
Alignment:
Q  339 ttagttggttgcaaattccaatagcaaccccaaacttattgtttagcaacactctacatagcctaactca 408  Q
    |||||||||||||||||||||||||||||||||||||| | |||||||||| ||||||  ||||||||||    
T  10660 ttagttggttgcaaattccaatagcaaccccaaacttaatatttagcaacattctacaatgcctaactca 10729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 317 - 394
Target Start/End: Original strand, 111521 - 111597
Alignment:
Q  317 ctctagtacctccaccccaaacttagttggttgcaaattccaatagcaaccccaaacttattgtttagcaacactcta 394  Q
    |||||||||| | |||||||||||| || |||||||||||||||||||||||||||| |||| |||||||||| ||||    
T  111521 ctctagtacccctaccccaaacttaatttgttgcaaattccaatagcaaccccaaac-tattatttagcaacattcta 111597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1885 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold1885
Description:

Target: scaffold1885; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 323 - 373
Target Start/End: Original strand, 46 - 96
Alignment:
Q  323 tacctccaccccaaacttagttggttgcaaattccaatagcaaccccaaac 373  Q
    |||| ||||||||||||||||  ||||| ||||||| ||||||||||||||    
T  46 tacccccaccccaaacttagtaagttgctaattccagtagcaaccccaaac 96  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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