View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21288_low_5 (Length: 349)
Name: NF21288_low_5
Description: NF21288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21288_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 9 - 331
Target Start/End: Complemental strand, 16578177 - 16577855
Alignment:
| Q |
9 |
gaagaatattgagcttacggatgaaggcataaaaagtgatgaagccatggtaagaacaaaacttttttctcttttcttatgtaaattacacacaactaag |
108 |
Q |
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| T |
16578177 |
gaagaatattgagcttacggatgaaggcataaaaagtgatgaagccatggtaagaacaaaacttttttctcttttcttatgtaaattacacacaactaag |
16578078 |
T |
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| Q |
109 |
agaagctcatgaaaaatgttcttcaagcacctcaatttatataactaaggggcatacccaagttgatcatgctaatgtgaaaaatgtaattagatgacat |
208 |
Q |
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| T |
16578077 |
agaagctcatgaaaaatgttcttcaagcacctcaatttatataactaaggggcatacccaagttgatcatgctaatgtgaaaaatgtaattagatgacat |
16577978 |
T |
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| Q |
209 |
tatggatagaagaaacaaacaaaaataaattttatctagttatgttaaatattatctttgattatttttctaaaggaaaattgtgaaacattgcacttga |
308 |
Q |
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| T |
16577977 |
tatggatagaagaaacaaacaaaaataatttttatctagttatgttaaatattatctttgattatttttctaaaggaaaattttgaaacattgcacttga |
16577878 |
T |
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| Q |
309 |
atgatgcatccataggcacgtat |
331 |
Q |
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| T |
16577877 |
atgatgcatccataggcacgtat |
16577855 |
T |
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