View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21288_low_8 (Length: 285)
Name: NF21288_low_8
Description: NF21288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21288_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 16 - 267
Target Start/End: Complemental strand, 27773366 - 27773123
Alignment:
| Q |
16 |
atagattccaagttaataatttatgcaaaaaataataataattcaatgaacattgtgatactacgtggcacaagtcatgatcacattctctagtatttaa |
115 |
Q |
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| T |
27773366 |
atagattccaagttaat---ttatgcaaaaaataataataattcaatgaacattgtgatactacgtggcacaagtcatgatcacattctctggtatttaa |
27773270 |
T |
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| Q |
116 |
aaactttgtttaatttatgcatacaagcctaggccaaatgatgcatttaattcaaaaagtaataaaaatttctagaataactcaacttcttaccatgtca |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27773269 |
aaactttgtttaatttatgcatacaagcctaggccaaatgatgcatttaattcaaaaagtaataaaaatttctagaataactcaacttcttaccat---- |
27773174 |
T |
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| Q |
216 |
tgtcaggtacaactaacttgacggcaaaatcagctccacaaatagcaattca |
267 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27773173 |
-gtcaggtacaactaacttgacggcaaaatcagctccacaaatagcaattca |
27773123 |
T |
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