View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21289_high_3 (Length: 412)
Name: NF21289_high_3
Description: NF21289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21289_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 45 - 409
Target Start/End: Complemental strand, 1587795 - 1587431
Alignment:
| Q |
45 |
ttccttaaataaatgctactttatgtcttcaaaagtttgcaagttgtgtgagataattttgggtgcctcatagggctaatagaatctgagtgtgaactac |
144 |
Q |
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| T |
1587795 |
ttccttaaataaatgctactttatgtcttcaaaagtttgcaagttgtgtgagataattttgggtgcctcatagggctaatagaatctgagtgtgaactac |
1587696 |
T |
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| Q |
145 |
tatgccgaaaacatggggagtggcacgactacagtagataacctcagccagaataaaaaatgtcacccaatcagaatggttttgaaagggacaaaaagac |
244 |
Q |
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| T |
1587695 |
tatgccgaaaacatggggagtggcacgactacagtagataacctcagccagaataaaaaatgtcacccaatcagaatggttttgaaagggacaaaaagac |
1587596 |
T |
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| Q |
245 |
agacaacacatccaattatatcagtgaaagagaatgttgactgaattagaagaatctcacagccagtgatatatgccaacagtcgtttaccttttttgta |
344 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1587595 |
agacaacacatccaattatatcagtgaatgagaatgttgactgaattagaagaatctcacagccagtgatatatgccaacagtcgtttaccttttttgta |
1587496 |
T |
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| Q |
345 |
tcattatgctgttcacagttgtctactcttccataccatattaagaaatctttctctgctcctcc |
409 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
1587495 |
tcattatgctgttcacatttgtctactcttccataccatattaagaaatctttctttgctcctcc |
1587431 |
T |
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