View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21289_high_7 (Length: 273)
Name: NF21289_high_7
Description: NF21289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21289_high_7 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 54; Significance: 4e-22; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 13 - 66
Target Start/End: Complemental strand, 5749098 - 5749045
Alignment:
| Q |
13 |
aatataaacaaaaccttcttttctgttaaggttgaagtagcgaaagccatgaga |
66 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5749098 |
aatataaacaaaaccttcttttctgttaaggttgaagtagcgaaagccatgaga |
5749045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 13 - 66
Target Start/End: Complemental strand, 5786057 - 5786004
Alignment:
| Q |
13 |
aatataaacaaaaccttcttttctgttaaggttgaagtagcgaaagccatgaga |
66 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5786057 |
aatataaacaaaaccttcttttctgttaaggttgaagtagcgaaagccatgaga |
5786004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 156 - 204
Target Start/End: Complemental strand, 5748954 - 5748906
Alignment:
| Q |
156 |
gcattatttcacggaatctacttagtaagggagttagttataccaagaa |
204 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5748954 |
gcattatttcacggaatctacttagtaagggagttagttataccaagaa |
5748906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 156 - 204
Target Start/End: Complemental strand, 5785913 - 5785865
Alignment:
| Q |
156 |
gcattatttcacggaatctacttagtaagggagttagttataccaagaa |
204 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5785913 |
gcattatttcacggaatctacttagtaagggagttagttataccaagaa |
5785865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 169 - 204
Target Start/End: Complemental strand, 5642385 - 5642350
Alignment:
| Q |
169 |
gaatctacttagtaagggagttagttataccaagaa |
204 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||| |
|
|
| T |
5642385 |
gaatctacttagtaagggagtgagttataccaagaa |
5642350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 171 - 204
Target Start/End: Original strand, 6021958 - 6021991
Alignment:
| Q |
171 |
atctacttagtaagggagttagttataccaagaa |
204 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| |
|
|
| T |
6021958 |
atctacttagtaagggagtgagttataccaagaa |
6021991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 156 - 204
Target Start/End: Complemental strand, 5672762 - 5672714
Alignment:
| Q |
156 |
gcattatttcacggaatctacttagtaagggagttagttataccaagaa |
204 |
Q |
| |
|
|||||||||| |||| |||||||||||||||| |||||||||||||| |
|
|
| T |
5672762 |
gcattatttctatgaatatacttagtaagggagtgagttataccaagaa |
5672714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University