View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21289_low_15 (Length: 206)
Name: NF21289_low_15
Description: NF21289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21289_low_15 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 52473000 - 52472795
Alignment:
| Q |
1 |
tccttgattcataaagaaacagtgagattgagcagaatcccataataacaataattggatacaatccacacggtcacgatacatatcattcagcttgaaa |
100 |
Q |
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| T |
52473000 |
tccttgattcataaagaaacagtgagattgagcagaatcccataataacaataattggatacaatccacacggtcacgatacaggtcattcagcttgaaa |
52472901 |
T |
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| Q |
101 |
agacggagtaaatactaaatatgatatgacatgtaagtattacaagctattttgcaataggaacacaaaaccaactcaccctgcaaatccttctccaaaa |
200 |
Q |
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| T |
52472900 |
agatggagtaaatgctaaatatgatatgacatgtaagtattacaagctattttgcaataggaacacaaaaccaactcacccggcaaatccttctccaaaa |
52472801 |
T |
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| Q |
201 |
tcttcc |
206 |
Q |
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|||||| |
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| T |
52472800 |
tcttcc |
52472795 |
T |
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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 204
Target Start/End: Original strand, 38793250 - 38793312
Alignment:
| Q |
142 |
acaagctattttgcaataggaacacaaaaccaactcaccctgcaaatccttctccaaaatctt |
204 |
Q |
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| T |
38793250 |
acaagctattttgtaagaggaatacaaaacaatctcacctggctaatccttctccaaaatctt |
38793312 |
T |
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