View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21289_low_2 (Length: 480)
Name: NF21289_low_2
Description: NF21289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21289_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 333; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 23 - 421
Target Start/End: Original strand, 52623859 - 52624249
Alignment:
| Q |
23 |
aatacatattggtatgaatgaaatgaatgaatggataccggattaagagtgttatggagcttgaaggtggtctcaagcatggatgattgctcctttgtta |
122 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
52623859 |
aatacatattggtatgaatgaa-----tgaatggataccggattaagagtgttatggagcttgaaggtgctctcaagcatggatgattgctcctttgtta |
52623953 |
T |
|
| Q |
123 |
gcctcagtttctttctacgatcgttgttattattgttgttatcagaatcagtgctacacgttacattttgatacaattggtgtctctccaaattgattct |
222 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
52623954 |
gcctcagtttctttctacgatcgttgttat---tgttgttatcagaatcagtgctacacgttacattttgataatattggtgtctctccaaattgattct |
52624050 |
T |
|
| Q |
223 |
ttcacccttgttgttgttgtgtacgttcataggttctccttttggacaaagctcaaaagctaggtcaaaacaaggtgcaatcataggtttactcaccaat |
322 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |
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| T |
52624051 |
ttcacccttgttgttgttgtgtacgttcataggttctccttttgaacaaagctcaaaagctaggtcaaaacaaggtgcaatcacaggtttattcaccaat |
52624150 |
T |
|
| Q |
323 |
ttctgcttcttcacctttgttgcacccattccaagaccgagacatagacctgtattgcattcttcatcactttccatggctacaatagttagttggttg |
421 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
52624151 |
ttctgcttcttcaccttcgttgcacccattccaagaccgagacatagacctgtattgcattcgtcatcactttccatggctacaatagttagttggttg |
52624249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 451 - 480
Target Start/End: Original strand, 52624279 - 52624308
Alignment:
| Q |
451 |
ggtgttggaaaatgatagtatgatttagtc |
480 |
Q |
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| T |
52624279 |
ggtgttggaaaatgatagtatgatttagtc |
52624308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 104 - 417
Target Start/End: Complemental strand, 40039619 - 40039309
Alignment:
| Q |
104 |
gatgattgctcctttgttagcctcagtttctttctacgatcgttgttattattgttgttatcagaatcagtgctacacgttacattttgatacaattggt |
203 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||| ||||||| ||||||||||||| ||||| |
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| T |
40039619 |
gatgattgctcctttgttagcctcagtttttttctacgatcgttgttgtt---gttgttatcagaatcagggctacactttacattttgataatgttggt |
40039523 |
T |
|
| Q |
204 |
gtctctccaaattgattctttcacccttgttgttgttgtgtacgttcataggttctccttttggacaaagctcaaaagctaggtcaaaacaaggtgcaat |
303 |
Q |
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||||||||||||||| |||||||||||| |||||||||||||||||||||| |||| |||||||||||||||||||||||||||| |||||||||||||| |
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| T |
40039522 |
gtctctccaaattgaatctttcacccttcttgttgttgtgtacgttcatagcttcttcttttggacaaagctcaaaagctaggtctaaacaaggtgcaat |
40039423 |
T |
|
| Q |
304 |
cataggtttactcaccaatttctgcttcttcacctttgttgcacccattccaagaccgagacatagacctgtattgcattcttcatcactttccatggct |
403 |
Q |
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|| ||||||| |||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40039422 |
cacaggtttattcactaatttctgcttcttctcctttgttgcacccattccaagaccgagacatagacctgtattgcattcttcatcactttccatggct |
40039323 |
T |
|
| Q |
404 |
acaatagttagttg |
417 |
Q |
| |
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||||||||| |||| |
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| T |
40039322 |
acaatagttggttg |
40039309 |
T |
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