View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21289_low_5 (Length: 364)
Name: NF21289_low_5
Description: NF21289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21289_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 13 - 345
Target Start/End: Original strand, 40421512 - 40421844
Alignment:
| Q |
13 |
aatattaaggcaaattctatgatatacctaaaattttcggtgtaccaaaaataaatttgtaccttcagaatttggtagaatcgtttcagaagcagaaaca |
112 |
Q |
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| T |
40421512 |
aatattaagacaaattctatggtatacttaaaattttcggtgtaccaaaaataaatttgtaccttcagagtttggtagaatcgtttcagaagcagaaaca |
40421611 |
T |
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| Q |
113 |
agatgaaataagggacgttcaagtgttgtgtcgggatttgatccaacgatcacagacgaagcaccatcaccaaaaagtgcttgtccaactaaggaatcca |
212 |
Q |
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| T |
40421612 |
agatgaaataatggacgttcaagtgttgtgttgggatttgatccaacgatcacagacgaagcaccatcaccaaaaagtgcttgtccaactaaagaatcca |
40421711 |
T |
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| Q |
213 |
agtgtgtttcattgggcccacgaaaagtaacaacagttatttcagaacacacgacgaggacacgtgcaccaatgttattctcagctagatctttggcaag |
312 |
Q |
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| T |
40421712 |
agtgtgtttcattgggcccacgaaaagtaacaacagttatttcagaacacacaacgaggacacgtgcaccaatgttattctcagctagatctttggcaag |
40421811 |
T |
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| Q |
313 |
acgaagaacggttccaccagcataacaaccttg |
345 |
Q |
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| T |
40421812 |
acgaagaacggttccaccagcataacaaccttg |
40421844 |
T |
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