View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21289_low_6 (Length: 327)
Name: NF21289_low_6
Description: NF21289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21289_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 15 - 310
Target Start/End: Complemental strand, 12829558 - 12829263
Alignment:
| Q |
15 |
aatcacaaccgtacaccggcggcaccggcgcatcgttaccggcgtattcctccaccaccatctccgtcaacctccgttcaaattcgccgctatttcgaag |
114 |
Q |
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| T |
12829558 |
aatcacaaccgtacaccggcggcaccggcgcatcgttatcggcgtattcctccaccaccatctccgtcaacctccgttcaaattcgccgctatttcgaag |
12829459 |
T |
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| Q |
115 |
cgaatttaaagctactaatcctcctattagcttctcgttgaagaaaatcatcggcaccgaaaccgttcccgttctttgacgtagctccttctctcgttca |
214 |
Q |
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| T |
12829458 |
cgaatttaacgctactaatcctcctattagcttctcgttgaagaaaatcatcggcaccgaaaccgttcccgttctttcacgtagctccttctctcgttca |
12829359 |
T |
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| Q |
215 |
cgaaacacgtcgacgttgatttcaacgaatttcagctttttctctttgaagaattttctcactgcggtacaatctctacaacttgacctcgagaag |
310 |
Q |
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| T |
12829358 |
cgaaacacgtcgacgttgatttcaacgaatttcagctttttctctttgaagaattttctcactgcggtacaatctctacaacttgacctcgagaag |
12829263 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 165
Target Start/End: Complemental strand, 13019739 - 13019702
Alignment:
| Q |
128 |
actaatcctcctattagcttctcgttgaagaaaatcat |
165 |
Q |
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| T |
13019739 |
actaatcctccgattagcttgtcgttgaagaaaatcat |
13019702 |
T |
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