View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21289_low_7 (Length: 323)

Name: NF21289_low_7
Description: NF21289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21289_low_7
NF21289_low_7
[»] chr6 (2 HSPs)
chr6 (1-323)||(31650026-31650348)
chr6 (6-42)||(18361313-18361349)
[»] chr8 (4 HSPs)
chr8 (1-41)||(39560348-39560388)
chr8 (1-39)||(30011767-30011805)
chr8 (2-51)||(39716782-39716831)
chr8 (6-42)||(3017486-3017522)
[»] chr5 (1 HSPs)
chr5 (1-42)||(16230786-16230827)
[»] chr7 (3 HSPs)
chr7 (1-42)||(5376312-5376353)
chr7 (1-38)||(35169981-35170018)
chr7 (1-37)||(18580353-18580389)
[»] chr3 (1 HSPs)
chr3 (12-52)||(20712719-20712759)
[»] chr2 (1 HSPs)
chr2 (1-41)||(33295059-33295099)


Alignment Details
Target: chr6 (Bit Score: 311; Significance: 1e-175; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 323
Target Start/End: Complemental strand, 31650348 - 31650026
Alignment:
Q  1 tttagaagtagttatgattaaagtaaaacatttttaatgatccgacaattataatctgcagagtcgccaggtgcattgataaaccaagtaggtaataagt 100  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||    
T  31650348 tttagaagtagttatgattaaagtcaaacatttttaatgatccgacaattataatctgcagagccaccaggtgcattgataaaccaagtaggtaataagt 31650249  T
Q  101 tttacgaggcatttcaacaaaagcatggaagttatgtcgatcttccttctgccaaaatttcggaactaatgaaatcatcaagtttggatgtaaactctct 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31650248 tttacgaggcatttcaacaaaagcatggaagttatgtcgatcttccttctgccaaaatttcggaactaatgaaatcatcaagtttggatgtaaactctct 31650149  T
Q  201 tattgttttcatcattttcacattcacataggttatgattatcctttttagttctatgcatcactgatttatttcagcatttactgttgcagaatgctcc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31650148 tattgttttcatcattttcacattcacataggttatgattatcctttttagttctatgcatcactgatttatttcagcatttactgttgcagaatgctcc 31650049  T
Q  301 tactcaatcacttttgagtgttg 323  Q
    |||||||||||||||||||||||    
T  31650048 tactcaatcacttttgagtgttg 31650026  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 42
Target Start/End: Original strand, 18361313 - 18361349
Alignment:
Q  6 aagtagttatgattaaagtaaaacatttttaatgatc 42  Q
    ||||||||||||||||||| |||| ||||||||||||    
T  18361313 aagtagttatgattaaagttaaacgtttttaatgatc 18361349  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000007; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 39560348 - 39560388
Alignment:
Q  1 tttagaagtagttatgattaaagtaaaacatttttaatgat 41  Q
    |||||||||||||||||||||||| ||||||||||||||||    
T  39560348 tttagaagtagttatgattaaagtcaaacatttttaatgat 39560388  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 30011767 - 30011805
Alignment:
Q  1 tttagaagtagttatgattaaagtaaaacatttttaatg 39  Q
    ||||||||||||||||||| |||| ||||||||||||||    
T  30011767 tttagaagtagttatgattgaagtcaaacatttttaatg 30011805  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 51
Target Start/End: Complemental strand, 39716831 - 39716782
Alignment:
Q  2 ttagaagtagttatgattaaagtaaaacatttttaatgatccgacaatta 51  Q
    |||||||||||||||||||| || |||  |||||||||||||||| ||||    
T  39716831 ttagaagtagttatgattaacgttaaatttttttaatgatccgactatta 39716782  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 42
Target Start/End: Original strand, 3017486 - 3017522
Alignment:
Q  6 aagtagttatgattaaagtaaaacatttttaatgatc 42  Q
    ||||||||||||||||||| |||| ||||||||||||    
T  3017486 aagtagttatgattaaagtcaaacttttttaatgatc 3017522  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 16230786 - 16230827
Alignment:
Q  1 tttagaagtagttatgattaaagtaaaacatttttaatgatc 42  Q
    |||||||||||||||||||||||| ||||||||| |||||||    
T  16230786 tttagaagtagttatgattaaagtcaaacattttaaatgatc 16230827  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 5376353 - 5376312
Alignment:
Q  1 tttagaagtagttatgattaaagtaaaacatttttaatgatc 42  Q
    |||||||||||||||||||| ||| |||| ||||||||||||    
T  5376353 tttagaagtagttatgattacagtcaaacgtttttaatgatc 5376312  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 35170018 - 35169981
Alignment:
Q  1 tttagaagtagttatgattaaagtaaaacatttttaat 38  Q
    |||||||||||||||||||||||| |||||| ||||||    
T  35170018 tttagaagtagttatgattaaagtcaaacatctttaat 35169981  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 18580353 - 18580389
Alignment:
Q  1 tttagaagtagttatgattaaagtaaaacatttttaa 37  Q
    |||||||||||||||||||||||| | ||||||||||    
T  18580353 tttagaagtagttatgattaaagtcatacatttttaa 18580389  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 52
Target Start/End: Original strand, 20712719 - 20712759
Alignment:
Q  12 ttatgattaaagtaaaacatttttaatgatccgacaattat 52  Q
    ||||||||||||  ||||||||||||||||| |||||||||    
T  20712719 ttatgattaaagctaaacatttttaatgatctgacaattat 20712759  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 33295059 - 33295099
Alignment:
Q  1 tttagaagtagttatgattaaagtaaaacatttttaatgat 41  Q
    |||| |||||||||||||||| || ||||||||||||||||    
T  33295059 tttataagtagttatgattaacgtcaaacatttttaatgat 33295099  T

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