View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21289_low_9 (Length: 273)

Name: NF21289_low_9
Description: NF21289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21289_low_9
NF21289_low_9
[»] chr3 (7 HSPs)
chr3 (13-66)||(5749045-5749098)
chr3 (13-66)||(5786004-5786057)
chr3 (156-204)||(5748906-5748954)
chr3 (156-204)||(5785865-5785913)
chr3 (169-204)||(5642350-5642385)
chr3 (171-204)||(6021958-6021991)
chr3 (156-204)||(5672714-5672762)


Alignment Details
Target: chr3 (Bit Score: 54; Significance: 4e-22; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 13 - 66
Target Start/End: Complemental strand, 5749098 - 5749045
Alignment:
Q  13 aatataaacaaaaccttcttttctgttaaggttgaagtagcgaaagccatgaga 66  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5749098 aatataaacaaaaccttcttttctgttaaggttgaagtagcgaaagccatgaga 5749045  T

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Target: chr3; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 13 - 66
Target Start/End: Complemental strand, 5786057 - 5786004
Alignment:
Q  13 aatataaacaaaaccttcttttctgttaaggttgaagtagcgaaagccatgaga 66  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5786057 aatataaacaaaaccttcttttctgttaaggttgaagtagcgaaagccatgaga 5786004  T

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Target: chr3; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 156 - 204
Target Start/End: Complemental strand, 5748954 - 5748906
Alignment:
Q  156 gcattatttcacggaatctacttagtaagggagttagttataccaagaa 204  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  5748954 gcattatttcacggaatctacttagtaagggagttagttataccaagaa 5748906  T

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Target: chr3; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 156 - 204
Target Start/End: Complemental strand, 5785913 - 5785865
Alignment:
Q  156 gcattatttcacggaatctacttagtaagggagttagttataccaagaa 204  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  5785913 gcattatttcacggaatctacttagtaagggagttagttataccaagaa 5785865  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 169 - 204
Target Start/End: Complemental strand, 5642385 - 5642350
Alignment:
Q  169 gaatctacttagtaagggagttagttataccaagaa 204  Q
    ||||||||||||||||||||| ||||||||||||||    
T  5642385 gaatctacttagtaagggagtgagttataccaagaa 5642350  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 171 - 204
Target Start/End: Original strand, 6021958 - 6021991
Alignment:
Q  171 atctacttagtaagggagttagttataccaagaa 204  Q
    ||||||||||||||||||| ||||||||||||||    
T  6021958 atctacttagtaagggagtgagttataccaagaa 6021991  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 156 - 204
Target Start/End: Complemental strand, 5672762 - 5672714
Alignment:
Q  156 gcattatttcacggaatctacttagtaagggagttagttataccaagaa 204  Q
    ||||||||||   |||| |||||||||||||||| ||||||||||||||    
T  5672762 gcattatttctatgaatatacttagtaagggagtgagttataccaagaa 5672714  T

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