View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2128_high_12 (Length: 236)

Name: NF2128_high_12
Description: NF2128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2128_high_12
NF2128_high_12
[»] chr3 (7 HSPs)
chr3 (169-222)||(29714800-29714855)
chr3 (98-173)||(30201189-30201264)
chr3 (110-151)||(30239072-30239113)
chr3 (109-173)||(30227364-30227428)
chr3 (93-146)||(30223140-30223193)
chr3 (104-147)||(36333937-36333980)
chr3 (121-173)||(30214735-30214787)
[»] chr7 (2 HSPs)
chr7 (103-158)||(16644735-16644790)
chr7 (103-158)||(17619096-17619151)
[»] chr1 (2 HSPs)
chr1 (109-176)||(16955665-16955732)
chr1 (113-184)||(16966187-16966258)
[»] chr5 (2 HSPs)
chr5 (112-151)||(11635002-11635041)
chr5 (96-173)||(25784269-25784346)
[»] chr6 (1 HSPs)
chr6 (112-173)||(5569427-5569488)


Alignment Details
Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 169 - 222
Target Start/End: Complemental strand, 29714855 - 29714800
Alignment:
Q  169 cttgtgactctttcaa--atatgaatcctttggaggatgtttcttgtgatttctgt 222  Q
    ||||||| ||||||||  ||||||||||||||||||||||||||||||||||||||    
T  29714855 cttgtgattctttcaacaatatgaatcctttggaggatgtttcttgtgatttctgt 29714800  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 98 - 173
Target Start/End: Complemental strand, 30201264 - 30201189
Alignment:
Q  98 tcatttgaattgtgcgccacatgagaggatccttgtatatgttccaccatagagaacacaccagacatacacttgt 173  Q
    |||| ||||| ||| |||||||||||||||||||| | |||||||||||||||| ||||||  ||||| |||||||    
T  30201264 tcatatgaatggtgtgccacatgagaggatccttgcaaatgttccaccatagaggacacacttgacatgcacttgt 30201189  T

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Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 110 - 151
Target Start/End: Complemental strand, 30239113 - 30239072
Alignment:
Q  110 tgcgccacatgagaggatccttgtatatgttccaccatagag 151  Q
    ||||||||||||||||||||||| ||||||||||||||||||    
T  30239113 tgcgccacatgagaggatccttgcatatgttccaccatagag 30239072  T

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Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 109 - 173
Target Start/End: Complemental strand, 30227428 - 30227364
Alignment:
Q  109 gtgcgccacatgagaggatccttgtatatgttccaccatagagaacacaccagacatacacttgt 173  Q
    |||||||||||||||||||||||| | ||||||||| |||||| ||||||  ||||| |||||||    
T  30227428 gtgcgccacatgagaggatccttgcaaatgttccactatagaggacacacttgacatgcacttgt 30227364  T

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Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 93 - 146
Target Start/End: Complemental strand, 30223193 - 30223140
Alignment:
Q  93 gttggtcatttgaattgtgcgccacatgagaggatccttgtatatgttccacca 146  Q
    |||| |||| ||||| |||||||||||||||||||||||| | |||||||||||    
T  30223193 gttgctcatgtgaatggtgcgccacatgagaggatccttgcaaatgttccacca 30223140  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 104 - 147
Target Start/End: Original strand, 36333937 - 36333980
Alignment:
Q  104 gaattgtgcgccacatgagaggatccttgtatatgttccaccat 147  Q
    |||| |||||||||||||||||||||||| | ||||||||||||    
T  36333937 gaatagtgcgccacatgagaggatccttgcaaatgttccaccat 36333980  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 173
Target Start/End: Complemental strand, 30214787 - 30214735
Alignment:
Q  121 agaggatccttgtatatgttccaccatagagaacacaccagacatacacttgt 173  Q
    |||||||||||| | |||||||||||||||| ||||||  ||||| |||||||    
T  30214787 agaggatccttgcaaatgttccaccatagaggacacacttgacatgcacttgt 30214735  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 103 - 158
Target Start/End: Original strand, 16644735 - 16644790
Alignment:
Q  103 tgaattgtgcgccacatgagaggatccttgtatatgttccaccatagagaacacac 158  Q
    ||||| ||||||||||||||||| |||||| | |||||||||||||||| ||||||    
T  16644735 tgaatggtgcgccacatgagaggttccttgcaaatgttccaccatagagcacacac 16644790  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 103 - 158
Target Start/End: Original strand, 17619096 - 17619151
Alignment:
Q  103 tgaattgtgcgccacatgagaggatccttgtatatgttccaccatagagaacacac 158  Q
    ||||| ||||||||||||||||| |||||| | |||||||||||||||| ||||||    
T  17619096 tgaatggtgcgccacatgagaggttccttgcaaatgttccaccatagagcacacac 17619151  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 109 - 176
Target Start/End: Original strand, 16955665 - 16955732
Alignment:
Q  109 gtgcgccacatgagaggatccttgtatatgttccaccatagagaacacaccagacatacacttgtgac 176  Q
    |||||||||||||||||||||||| | || |||||||||| ||  |||||  ||||||||||||||||    
T  16955665 gtgcgccacatgagaggatccttgcaaatattccaccataaagggcacacttgacatacacttgtgac 16955732  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 113 - 184
Target Start/End: Original strand, 16966187 - 16966258
Alignment:
Q  113 gccacatgagaggatccttgtatatgttccaccatagagaacacaccagacatacacttgtgactctttcaa 184  Q
    |||||||| ||||||||||| | || |||||||||| || ||||||  ||||||||||||||||| ||||||    
T  16966187 gccacatgtgaggatccttgcaaatattccaccataaaggacacacttgacatacacttgtgactatttcaa 16966258  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 112 - 151
Target Start/End: Complemental strand, 11635041 - 11635002
Alignment:
Q  112 cgccacatgagaggatccttgtatatgttccaccatagag 151  Q
    ||||||||||||||||||||| ||||| ||||||||||||    
T  11635041 cgccacatgagaggatccttgcatatgctccaccatagag 11635002  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 96 - 173
Target Start/End: Original strand, 25784269 - 25784346
Alignment:
Q  96 ggtcatttgaattgtgcgccacatgagaggatccttgtatatgttccaccatagagaacacaccagacatacacttgt 173  Q
    ||||||| |||| | ||||||||||| |||||| ||  |||| |||||||||||||  |||||  |||||||||||||    
T  25784269 ggtcattcgaatggagcgccacatgaaaggatctttacatatattccaccatagagggcacacttgacatacacttgt 25784346  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 112 - 173
Target Start/End: Original strand, 5569427 - 5569488
Alignment:
Q  112 cgccacatgagaggatccttgtatatgttccaccatagagaacacaccagacatacacttgt 173  Q
    |||||||  |||||||||||| | |||||||||||||||| ||||||  ||||| |||||||    
T  5569427 cgccacacaagaggatccttgcaaatgttccaccatagaggacacacttgacatgcacttgt 5569488  T

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