View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2128_high_2 (Length: 460)
Name: NF2128_high_2
Description: NF2128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2128_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 253; Significance: 1e-140; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 62 - 395
Target Start/End: Complemental strand, 21077097 - 21076764
Alignment:
| Q |
62 |
cttagaagttgtgtcccaatccatttaagtatttcctgcatttggctaattgattgatcaggataggaacttaagttttatttaactgggctagtacagt |
161 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21077097 |
cttagaagttgtgtcccaatccatttaagtattttttgcatttagttaattgattgatcaggataggaacttaagttttatttaactgggctagtacagt |
21076998 |
T |
|
| Q |
162 |
ttccactaactgtgagatttttcaatatggtgtctgagatatcctctcagattccgcacaatttctcttannnnnnngtctacctgaccatacatgtttt |
261 |
Q |
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||||| ||||||||||||||||||||||||||||||| ||| ||||||| |||||||||||||||||||| ||||||||| ||||||||||||| |
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| T |
21076997 |
ttccattaactgtgagatttttcaatatggtgtctgaaataccctctcaaattccgcacaatttctcttatttttttgtctacctggccatacatgtttt |
21076898 |
T |
|
| Q |
262 |
ggaaagcttcttcagactttagctataatcagcttaattgtgaacgttttgacaatcttacaaagaccacctttaaatgctatatttcgttatatggttg |
361 |
Q |
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|||||||||||||| |||||||||||| |||||||||||||||||| ||| |||||||||||||||||||||||||| ||||||||||| |||||||||| |
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| T |
21076897 |
ggaaagcttcttcaaactttagctatattcagcttaattgtgaacgatttcacaatcttacaaagaccacctttaaacgctatatttcgctatatggttg |
21076798 |
T |
|
| Q |
362 |
taaacacatcatgctatgttcaaaacacaaaggg |
395 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |
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| T |
21076797 |
taaacacatcatgctatgttcaaaacacaaaggg |
21076764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 173; E-Value: 7e-93
Query Start/End: Original strand, 61 - 395
Target Start/End: Complemental strand, 21023175 - 21022832
Alignment:
| Q |
61 |
acttagaagttgtgtcccaatccatttaagtatttcctgcatttggctaattgattgatcaggataggaacttaagttttatttaactgggctagtacag |
160 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| || | |||||||||||||||||||||||||||||||| |
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| T |
21023175 |
acttagaagttgtgccccaatccatttaagtatttcctgcatttagctaattgattgatcgggtttaaaacttaagttttatttaactgggctagtacag |
21023076 |
T |
|
| Q |
161 |
tttccacta---actgtgagatttttcaatatggtgtctgagatatcctctcagattccgcacaatttctcttannnnnnn-----gtctacctgaccat |
252 |
Q |
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| T |
21023075 |
tcccccctactcactgtgagattttccaataaggtgcctgagatactctctcaaattctgcacaatttctctttttttttttttttgtctatctggccat |
21022976 |
T |
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| Q |
253 |
acatgttttggaaagcttctt-cagactttagctataatcagcttaattgtgaacgttttgacaatcttacaaagaccacctttaaatgctatatttcgt |
351 |
Q |
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||||||||||||||||||||| |||| |||||||||||||| ||||||||| |||| |||||||||||||||||||| ||||||||| ||||||||||| |
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| T |
21022975 |
acatgttttggaaagcttctttcagaatttagctataatcaacttaattgttaacgatttgacaatcttacaaagacaacctttaaaccctatatttcgt |
21022876 |
T |
|
| Q |
352 |
tatatggttgtaaacacatcatgctatgttcaaaacacaaaggg |
395 |
Q |
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| T |
21022875 |
tatatggttgtaaacacatcatgctatgttcaaaacacaaaggg |
21022832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 393 - 450
Target Start/End: Complemental strand, 21076676 - 21076619
Alignment:
| Q |
393 |
gggacagagcttacaataatctaagttattgttaggatacattattcccatgatgatg |
450 |
Q |
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| T |
21076676 |
gggacagagcttacaataatctaagttattgttaggatacattattcccatgatgatg |
21076619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 393 - 438
Target Start/End: Complemental strand, 21022744 - 21022699
Alignment:
| Q |
393 |
gggacagagcttacaataatctaagttattgttaggatacattatt |
438 |
Q |
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| T |
21022744 |
gggacagagcttacagtaatctaagttattgctaggatacattatt |
21022699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 172 - 215
Target Start/End: Complemental strand, 21806803 - 21806760
Alignment:
| Q |
172 |
tgtgagatttttcaatatggtgtctgagatatcctctcagattc |
215 |
Q |
| |
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||||| |||||| |||||||||||||||||||||||| |||||| |
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| T |
21806803 |
tgtgatattttttaatatggtgtctgagatatcctcttagattc |
21806760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 144 - 231
Target Start/End: Original strand, 33699737 - 33699824
Alignment:
| Q |
144 |
taactgggctagtacagtttccactaactgtgagatttttcaatatggtgtctgagatatcctctcagattccgcacaatttctctta |
231 |
Q |
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||||| |||||||| || |||||||||||||||||||| ||||||||||||||||||| |||||||||||| ||||| ||||||||| |
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| T |
33699737 |
taactaggctagtatggtctccactaactgtgagattttccaatatggtgtctgagataccctctcagattctgcacactttctctta |
33699824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 172 - 230
Target Start/End: Complemental strand, 260759 - 260701
Alignment:
| Q |
172 |
tgtgagatttttcaatatggtgtctgagatatcctctcagattccgcacaatttctctt |
230 |
Q |
| |
|
||||||||||| ||||||||||| ||||||| |||||||||||| |||| |||||||| |
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| T |
260759 |
tgtgagattttccaatatggtgtatgagataccctctcagattcttcacattttctctt |
260701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 172 - 230
Target Start/End: Original strand, 655162 - 655220
Alignment:
| Q |
172 |
tgtgagatttttcaatatggtgtctgagatatcctctcagattccgcacaatttctctt |
230 |
Q |
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||||||||||| ||||||||||| ||||||| |||||||||||| |||| |||||||| |
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| T |
655162 |
tgtgagattttccaatatggtgtatgagataccctctcagattcttcacattttctctt |
655220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 172 - 230
Target Start/End: Original strand, 840897 - 840955
Alignment:
| Q |
172 |
tgtgagatttttcaatatggtgtctgagatatcctctcagattccgcacaatttctctt |
230 |
Q |
| |
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||||||||||| ||||||||||| ||||||| |||||||||||| |||| |||||||| |
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| T |
840897 |
tgtgagattttccaatatggtgtatgagataccctctcagattcttcacattttctctt |
840955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 145 - 202
Target Start/End: Original strand, 25427493 - 25427550
Alignment:
| Q |
145 |
aactgggctagtacagtttccactaactgtgagatttttcaatatggtgtctgagata |
202 |
Q |
| |
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|||||||||||| |||| |||||| ||| |||||||||||||| ||||| ||||||| |
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| T |
25427493 |
aactgggctagtccagtctccactgactttgagatttttcaatctggtgcttgagata |
25427550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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