View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2128_high_9 (Length: 253)
Name: NF2128_high_9
Description: NF2128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2128_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 10 - 234
Target Start/End: Complemental strand, 22552094 - 22551870
Alignment:
| Q |
10 |
attatactaggaagctgaaacaattgatgcctatgttagttattgattgatcttctatgttttgaaaaaattacattcttgatatatttggtacattaat |
109 |
Q |
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| T |
22552094 |
attatactaggaagctgaaacaattgatgcctatgttagttattgattgatcttctatgttttgaaaaaattacattcttgatatatttggtacattaac |
22551995 |
T |
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| Q |
110 |
taatttttgtatgaaagtggcttacaaaatatgaagtgggagcaaaaccaaatccaccaaagaagccaagaagatcgccaaagaaagggaatgtaacccc |
209 |
Q |
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| T |
22551994 |
taattcttgtatgaaagtggcttacaaaatatgaagtgggagcaaaaccaaatccaccaaagaagccaagaagatcgccaaagaaagggaatgtaacccc |
22551895 |
T |
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| Q |
210 |
aataaaaagtgtaaaagctgcaaca |
234 |
Q |
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| T |
22551894 |
aataaaaagtgtaaaagctgcaaca |
22551870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 125 - 235
Target Start/End: Original strand, 41896200 - 41896310
Alignment:
| Q |
125 |
agtggcttacaaaatatgaagtgggagcaaaaccaaatccaccaaagaagccaagaagatcgccaaagaaagggaatgtaaccccaataaaaagtgtaaa |
224 |
Q |
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| T |
41896200 |
agtgccttacaaaatatgacgtgggagcaaaaccaaatccaccaaagaacccaagaagatctccaaagaaaggaaaactcaccccaaataataatgtaaa |
41896299 |
T |
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| Q |
225 |
agctgcaacat |
235 |
Q |
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| T |
41896300 |
agctgaaacat |
41896310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 130 - 194
Target Start/End: Original strand, 41890593 - 41890657
Alignment:
| Q |
130 |
cttacaaaatatgaagtgggagcaaaaccaaatccaccaaagaagccaagaagatcgccaaagaa |
194 |
Q |
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| T |
41890593 |
cttacaaaatatgaagtgggagcaaaaccaaatccaccaaagaatccaagaagatcaccaaagaa |
41890657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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