View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2128_low_10 (Length: 258)
Name: NF2128_low_10
Description: NF2128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2128_low_10 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
| [»] scaffold0007 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 13 - 258
Target Start/End: Complemental strand, 33681054 - 33680805
Alignment:
| Q |
13 |
aatatccaccatgataaacggcatttatatttcaactagaaaccaatacaaatgctgggtgaatcggtcgatcacttaactatatatattgcacctatag |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33681054 |
aatatccaccatgataaacggcatttatatttcaactagaaaccaatacaaatgctgggtgagtcggtcgatcacttaactatatatattgcacctatag |
33680955 |
T |
|
| Q |
113 |
tatgacttatgagattagaaaaagattatggtacaaatttatttatttgaaagttgcggcatttatattgcatcgttgtgattgtctaa----nnnnnnn |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
33680954 |
tatgacttatgagattagaaaaagattatggtacaaatttatttatttgaaagttgcggcatttatactgcatcgttgtgattgtctaattttttttttt |
33680855 |
T |
|
| Q |
209 |
naacaaattaaaatggaatataatattaaaccaagagtgaatccccccgc |
258 |
Q |
| |
|
|| || | |||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
33680854 |
taagaagtcaaaatggaatataatattaaaccaagagtgaatcaccccgc |
33680805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 210 - 248
Target Start/End: Complemental strand, 248088 - 248050
Alignment:
| Q |
210 |
aacaaattaaaatggaatataatattaaaccaagagtga |
248 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| ||||| |
|
|
| T |
248088 |
aacaaatcaaaatggaatataatattaaaccaaaagtga |
248050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 210 - 248
Target Start/End: Complemental strand, 37124942 - 37124904
Alignment:
| Q |
210 |
aacaaattaaaatggaatataatattaaaccaagagtga |
248 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| ||||| |
|
|
| T |
37124942 |
aacaaatcaaaatggaatataatattaaaccaaaagtga |
37124904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University