View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2128_low_11 (Length: 258)
Name: NF2128_low_11
Description: NF2128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2128_low_11 |
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| [»] scaffold1215 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 177; Significance: 2e-95; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 20 - 247
Target Start/End: Original strand, 10524975 - 10525202
Alignment:
| Q |
20 |
ggttgcagactccactaaattttcaacactaacaggacaagaaggaaaaaatgtgtgaggttaagtcccttatttgtgtgcttgaaatcatctaaattct |
119 |
Q |
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| T |
10524975 |
ggttgcagactccactaaattttcaacactaacaggacaagaaggaaaaaatgtgtgaggttaagtcccttaattgtgtgcttgaattcatttaaattct |
10525074 |
T |
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| Q |
120 |
ctaaataagggggaaattttgtttttgtnnnnnnnnnnnnngggttggtttagaggttttaatttttcaccaccagaaagttcaaatttatgtcatcatc |
219 |
Q |
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| T |
10525075 |
ctaaataagggggaaattttgtttttgtaaaaaataaaaaagggttggtttagaggttttaatttttcaccaccagaaagttcaaatttatgtcatcatc |
10525174 |
T |
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| Q |
220 |
acggattttactttggacagtgagtatt |
247 |
Q |
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| T |
10525175 |
acggattttactttggacagtgagtatt |
10525202 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 56 - 146
Target Start/End: Original strand, 10531817 - 10531907
Alignment:
| Q |
56 |
acaagaaggaaaaaatgtgtgaggttaagtcccttatttgtgtgcttgaaatcatctaaattctctaaataagggggaaattttgtttttg |
146 |
Q |
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| T |
10531817 |
acaagaaggaaaaaatgtgtgaggttaagtcccttatttgtgtgcttgaaatcatctaaattttcttaataagggggaaattttgtttttg |
10531907 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 61 - 146
Target Start/End: Original strand, 10534347 - 10534432
Alignment:
| Q |
61 |
aaggaaaaaatgtgtgaggttaagtcccttatttgtgtgcttgaaatcatctaaattctctaaa-taagggggaaattttgtttttg |
146 |
Q |
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| T |
10534347 |
aaggaaaaaa-gtgcgaggttaagtcccttatttgtgtgcttgatatcatgtaaattctctaaattaaggggagaattttgtttttg |
10534432 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 193 - 243
Target Start/End: Original strand, 10531973 - 10532023
Alignment:
| Q |
193 |
cagaaagttcaaatttatgtcatcatcacggattttactttggacagtgag |
243 |
Q |
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| T |
10531973 |
cagaaagttcaactttatgtcatcatcacggattttactttggacagtgag |
10532023 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 65 - 116
Target Start/End: Original strand, 10527539 - 10527590
Alignment:
| Q |
65 |
aaaaaatgtgtgaggttaagtcccttatttgtgtgcttgaaatcatctaaat |
116 |
Q |
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| T |
10527539 |
aaaaaaagtgtgaggttaagtcccttatttgtgtgcttgaaatcatttaaat |
10527590 |
T |
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Target: scaffold1215 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold1215
Description:
Target: scaffold1215; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 61 - 146
Target Start/End: Original strand, 1535 - 1620
Alignment:
| Q |
61 |
aaggaaaaaatgtgtgaggttaagtcccttatttgtgtgcttgaaatcatctaaattctctaaa-taagggggaaattttgtttttg |
146 |
Q |
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| T |
1535 |
aaggaaaaaa-gtgcgaggttaagtcccttatttgtgtgcttgatatcatgtaaattctctaaattaaggggagaattttgtttttg |
1620 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 146
Target Start/End: Complemental strand, 34371710 - 34371664
Alignment:
| Q |
101 |
ttgaaatcatctaaattctctaaataaggggg-aaattttgtttttg |
146 |
Q |
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| T |
34371710 |
ttgaaatcatctaaattctctacattagggggaaaattttgtttttg |
34371664 |
T |
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