View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2128_low_12 (Length: 253)
Name: NF2128_low_12
Description: NF2128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2128_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 102; Significance: 9e-51; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 23 - 148
Target Start/End: Original strand, 21928735 - 21928860
Alignment:
| Q |
23 |
atagggttggtctcttttacagatttttctttggtaatgaaatagttgcattgatactgaaaccatcaaattgttgattgaagttttcttatgaaatatc |
122 |
Q |
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| T |
21928735 |
atagggttggtctgttttacagatttttctttggtaatgaagtagttgcattgatattgaaaccatcaaattgttgattgaacttttcttatgaaatatc |
21928834 |
T |
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| Q |
123 |
tcaccgattgactaactcctccattt |
148 |
Q |
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| T |
21928835 |
tcatcaattgactaactcctccattt |
21928860 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 23 - 148
Target Start/End: Original strand, 21940690 - 21940823
Alignment:
| Q |
23 |
atagggttggtctcttttacagatttt-tctttggtaatgaaatagttgcattgatactgaaaccatcaaattg-------ttgattgaagttttcttat |
114 |
Q |
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| T |
21940690 |
atagggttggtctgttttacagattttatctttggcaattaaatagttgcattgatattggaggcatcaaattggtatgtgttgattgaacttttcttat |
21940789 |
T |
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| Q |
115 |
gaaatatctcaccgattgactaactcctccattt |
148 |
Q |
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| T |
21940790 |
gaaatatctcattaattgactaactcctccattt |
21940823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 147 - 197
Target Start/End: Original strand, 21928888 - 21928938
Alignment:
| Q |
147 |
ttatatgtttgttttggtatttgaatggagaaaacatgttttcttctcaat |
197 |
Q |
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| T |
21928888 |
ttatatgtttgttttggtatttgaatggagaaaacatgtgttcttctcaat |
21928938 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 37 - 78
Target Start/End: Original strand, 22038232 - 22038273
Alignment:
| Q |
37 |
ttttacagatttttctttggtaatgaaatagttgcattgata |
78 |
Q |
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| T |
22038232 |
ttttacagatttttctttggtaatgaaatagttgcattgata |
22038273 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 148 - 197
Target Start/End: Original strand, 21940852 - 21940901
Alignment:
| Q |
148 |
tatatgtttgttttggtatttgaatggagaaaacatgttttcttctcaat |
197 |
Q |
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| T |
21940852 |
tatatgtttgttttggtatttgaatggaaaaaacatgtgttattctcaat |
21940901 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 23 - 78
Target Start/End: Original strand, 22039950 - 22040006
Alignment:
| Q |
23 |
atagggttggtctcttttacagatttt-tctttggtaatgaaatagttgcattgata |
78 |
Q |
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||||||||||||| ||||||||||| | || |||||||||||||||||||||||||| |
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| T |
22039950 |
atagggttggtctgttttacagattatatccttggtaatgaaatagttgcattgata |
22040006 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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