View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2128_low_4 (Length: 385)
Name: NF2128_low_4
Description: NF2128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2128_low_4 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 182 - 368
Target Start/End: Complemental strand, 33678472 - 33678286
Alignment:
| Q |
182 |
taactaaatggttagcaggagtatcagtcaaacaagtattgaaacaagtcatatggaagtgttcagctcgcatcagtcacctactagctttagcatcatc |
281 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33678472 |
taactaaatggttagcaggagtatcagtcaaacaagtattgaaacaagtcatatggaagtgttcagctcgcatcagtcacctactagctttagcatcatc |
33678373 |
T |
|
| Q |
282 |
atatattttgtctaattaagggtatagtaacctccataattggattcagtaactaaaataagcatcatatctacataatgatataga |
368 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33678372 |
atatattttgtctaattaagggtatagtaacctccataattggattcagtaactaaaataagcatcatatctacataatgatataga |
33678286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 33680755 - 33680570
Alignment:
| Q |
1 |
tttatgccacactgataggcacctgaagagaaagcgaataataaacaattacatggaaacacttatattgagaggctgatttgatttcaaccacataaaa |
100 |
Q |
| |
|
||||||||||||||| | |||||| ||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
33680755 |
tttatgccacactgagaagcacctaaagagaaagcgaataataaacaattacgtggaaacacttatgctgagaggctgatttgatttcaaccacataaaa |
33680656 |
T |
|
| Q |
101 |
-aattcagcttcactttgtcaaaaaggttacatggttcagacaccgcattttttaagatacggttgttacgttcttttcatataac |
185 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33680655 |
gaattcagtttcactttgtcaaaaaggttacatggttcagacaccgcattttttaagatacggttgttacgttcttttcatataac |
33680570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 74 - 182
Target Start/End: Original strand, 20114537 - 20114646
Alignment:
| Q |
74 |
ggctgatttgatttcaaccacataaaa-aattcagcttcactttgtcaaaaaggttacatggttcagacaccgcattttttaagatacggttgttacgtt |
172 |
Q |
| |
|
|||||||||| ||||||||||||||| |||||| ||||||||||||| ||||| |||| || ||| | || ||||||||||| | |||||||| |||| |
|
|
| T |
20114537 |
ggctgatttgttttcaaccacataaacgaattcaacttcactttgtcagaaagggtacacggatcataagccacattttttaagctgcggttgtttcgtt |
20114636 |
T |
|
| Q |
173 |
cttttcatat |
182 |
Q |
| |
|
|||| ||||| |
|
|
| T |
20114637 |
ctttccatat |
20114646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University