View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2128_low_6 (Length: 380)

Name: NF2128_low_6
Description: NF2128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2128_low_6
NF2128_low_6
[»] chr7 (1 HSPs)
chr7 (31-373)||(11033941-11034269)
[»] chr1 (2 HSPs)
chr1 (157-373)||(15076792-15077004)
chr1 (56-128)||(15076723-15076795)
[»] chr5 (2 HSPs)
chr5 (157-373)||(18667779-18667989)
chr5 (31-128)||(18667986-18668083)
[»] chr3 (7 HSPs)
chr3 (143-299)||(21941419-21941570)
chr3 (143-324)||(22182424-22182600)
chr3 (66-200)||(21929001-21929135)
chr3 (231-366)||(21929143-21929279)
chr3 (30-142)||(21940974-21941086)
chr3 (30-142)||(22040234-22040344)
chr3 (317-366)||(21941606-21941655)


Alignment Details
Target: chr7 (Bit Score: 184; Significance: 2e-99; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 31 - 373
Target Start/End: Original strand, 11033941 - 11034269
Alignment:
Q  31 gtgtgggtgagttttgcttctaccatcatgattcatgtagcaggataaagtggatattagaatcaaccccttaagctatggataaatatttatcttgata 130  Q
    |||||||| ||| |||||| |||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |||||||    
T  11033941 gtgtgggtcagtattgcttttaccgtcatgattcatgtagcaggataaagttgatattagaatcaaccctttaagctatggataaatatttaacttgata 11034040  T
Q  131 ctgcacagtaaatgattcatgagatattgaacggttcaaatttaacatcatggagtgttcatagctttatctattgatgtgttggacagtattataatac 230  Q
     |||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |||||     |      
T  11034041 ttgcacagtaaatgattcacgagatattgaacagttcaaatttaacatcatggagtgttcatagctttatttatagatgtgttggatagtat-----tgg 11034135  T
Q  231 tattaacatg-ttatctacaaatgactagatttagtgatagtaggctgaggcaaaaatttagtgattcattaaggggtattggttggttacattagtcac 329  Q
    |||||||||| |||||||||||||||||        |||||||  ||  ||||||||||||||||||||||||| ||||||||||||||||||||| |||    
T  11034136 tattaacatgtttatctacaaatgacta--------gatagtatcct--ggcaaaaatttagtgattcattaagtggtattggttggttacattagccac 11034225  T
Q  330 tgttacttcagtgatgcataaatgcagcttagttcatctcactc 373  Q
    |||||||||||||||||||   ||||||||||||||| ||||||    
T  11034226 tgttacttcagtgatgcatttttgcagcttagttcatttcactc 11034269  T

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Target: chr1 (Bit Score: 138; Significance: 5e-72; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 157 - 373
Target Start/End: Original strand, 15076792 - 15077004
Alignment:
Q  157 ttgaacggttcaaatttaacatcatggagtgttcatagctttatctattgatgtgttggacagtattataatactattaacatgt-tatctacaaatgac 255  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||      |||||||||||| |||||||||||||     
T  15076792 ttgaacggttcaaatttaacatcatggagtgttcatagctttatctatagatgtgttggatagtattg-----ctattaacatgtgtatctacaaatgaa 15076886  T
Q  256 tagatttagtgatagtaggctgaggcaaaaatttagtgattcattaaggggtattggttggttacattagtcactgttacttcagtgatgcataaatgca 355  Q
    |||||||||||||||||||||| ||||||||||| ||||||||| ||| ||||||||||||||||||||| ||||||||||||||||||||||   ||||    
T  15076887 tagatttagtgatagtaggctggggcaaaaattttgtgattcatgaagtggtattggttggttacattagccactgttacttcagtgatgcatttgtgca 15076986  T
Q  356 gcttagttcatctcactc 373  Q
    ||||||||||| ||||||    
T  15076987 gcttagttcatttcactc 15077004  T

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Target: chr1; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 56 - 128
Target Start/End: Original strand, 15076723 - 15076795
Alignment:
Q  56 tcatgattcatgtagcaggataaagtggatattagaatcaaccccttaagctatggataaatatttatcttga 128  Q
    |||||||||||||||||||||||||| |||||||||||| |||| |||||||||||||||||||||| |||||    
T  15076723 tcatgattcatgtagcaggataaagttgatattagaatcgaccctttaagctatggataaatatttaacttga 15076795  T

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Target: chr5 (Bit Score: 127; Significance: 2e-65; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 157 - 373
Target Start/End: Complemental strand, 18667989 - 18667779
Alignment:
Q  157 ttgaacggttcaaatttaacatcatggagtgttcatagctttatctattgatgtgttggacagtattataatactattaacatgt-tatctacaaatgac 255  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||      |||||||||||| ||||||||||||||    
T  18667989 ttgaacggttcaaatttaacatcatggagtgttcatagctttatctatagatgtgttggatagtattg-----ctattaacatgtgtatctacaaatgac 18667895  T
Q  256 tagatttagtgatagtaggctgaggcaaaaatttagtgattcattaaggggtattggttggttacattagtcactgttacttcagtgatgcataaatgca 355  Q
    |||||||||||||||||||||| |  |||  ||| ||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||   ||||    
T  18667894 tagatttagtgatagtaggctggg--aaattttttgtgattcattaagtggtattggttggttacattagccactgttacttcagtgatgcatttgtgca 18667797  T
Q  356 gcttagttcatctcactc 373  Q
    ||||||||||| ||||||    
T  18667796 gcttagttcatttcactc 18667779  T

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Target: chr5; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 31 - 128
Target Start/End: Complemental strand, 18668083 - 18667986
Alignment:
Q  31 gtgtgggtgagttttgcttctaccatcatgattcatgtagcaggataaagtggatattagaatcaaccccttaagctatggataaatatttatcttga 128  Q
    |||||||||||| |||||| |||| |||||||||||||||||||||||||| |||||||||||| |||| |||||||||||||||||||||| |||||    
T  18668083 gtgtgggtgagtattgcttttaccgtcatgattcatgtagcaggataaagttgatattagaatcgaccctttaagctatggataaatatttaacttga 18667986  T

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Target: chr3 (Bit Score: 117; Significance: 2e-59; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 143 - 299
Target Start/End: Original strand, 21941419 - 21941570
Alignment:
Q  143 tgattcatgagatattgaacggttcaaatttaacatcatggagtgttcatagctttatctattgatgtgttggacagtattataatactattaacatgtt 242  Q
    |||| |||||||||| |||| ||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||     |||||||||||||    
T  21941419 tgatgcatgagatatagaacagttcaaatttaacatcatggagtgttcatagatttatctatagatgtgttggacagtatta-----ctattaacatgtt 21941513  T
Q  243 atctacaaatgactagatttagtgatagtaggctgaggcaaaaatttagtgattcat 299  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21941514 atctacaaatgactagatttagtgatagtaggctgaggcaaaaatttagtgattcat 21941570  T

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Target: chr3; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 143 - 324
Target Start/End: Original strand, 22182424 - 22182600
Alignment:
Q  143 tgattcatgagatattgaacggttcaaatttaacatcatggagtgttcatagctttatctattgatgtgttggacagtattataatactattaacatgtt 242  Q
    |||| ||| |||||| |||| ||||||||| |||||||||||||||| |||||||||||||| ||||||||||||| |||||     |||||||||||||    
T  22182424 tgatgcataagatatagaacagttcaaattaaacatcatggagtgtttatagctttatctatagatgtgttggacaatatta-----ctattaacatgtt 22182518  T
Q  243 atctacaaatgactagatttagtgatagtaggctgaggcaaaaatttagtgattcattaaggggtattggttggttacatta 324  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||  |||||||||||||| |||||    
T  22182519 atctacaaatgactagatttagtgacagtaggctgaggcaaaaatttagtgattcattaactggtattggttggttgcatta 22182600  T

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Target: chr3; HSP #3
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 66 - 200
Target Start/End: Original strand, 21929001 - 21929135
Alignment:
Q  66 tgtagcaggataaagtggatattagaatcaaccccttaagctatggataaatatttatcttgatactgcacagtaaatgattcatgagatattgaacggt 165  Q
    |||| ||||||||||||||||||||||||||||| |||| ||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||    
T  21929001 tgtaacaggataaagtggatattagaatcaaccctttaaactatggataaatatttaacctgatactgcacagtaaatgattcatgagatattgaacggt 21929100  T
Q  166 tcaaatttaacatcatggagtgttcatagctttat 200  Q
    | |||||||||||||||||||  ||||||||||||    
T  21929101 ttaaatttaacatcatggagtcatcatagctttat 21929135  T

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Target: chr3; HSP #4
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 231 - 366
Target Start/End: Original strand, 21929143 - 21929279
Alignment:
Q  231 tattaacatgttatctacaaatgactagatttagtgatagtaggctgaggcaaaaatttagtgattcattaaggggtattggttggttacattagtcact 330  Q
    |||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | ||||    
T  21929143 tattaacatgttatctaccactgactagatttagtgatagtaggctgaggcaaaaatttagtgattcattaagtggtattggttggttacattggccact 21929242  T
Q  331 g-ttacttcagtgatgcataaatgcagcttagttcat 366  Q
    | |||||||||||||||||   |||||||||||||||    
T  21929243 gtttacttcagtgatgcatttgtgcagcttagttcat 21929279  T

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Target: chr3; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 30 - 142
Target Start/End: Original strand, 21940974 - 21941086
Alignment:
Q  30 tgtgtgggtgagttttgcttctaccatcatgattcatgtagcaggataaagtggatattagaatcaaccccttaagctatggataaatatttatcttgat 129  Q
    ||||||||||||| |||||||||||||||||||||||| |||||||| |||| ||||||||||||||||| || | ||||||||||||||||| ||| ||    
T  21940974 tgtgtgggtgagtattgcttctaccatcatgattcatgcagcaggattaagttgatattagaatcaaccctttcacctatggataaatatttaactttat 21941073  T
Q  130 actgcacagtaaa 142  Q
    |||||||||||||    
T  21941074 actgcacagtaaa 21941086  T

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Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 30 - 142
Target Start/End: Original strand, 22040234 - 22040344
Alignment:
Q  30 tgtgtgggtgagttttgcttctaccatcatgattcatgtagcaggataaagtggatattagaatcaaccccttaagctatggataaatatttatcttgat 129  Q
    |||||| |||||| |||||||||| ||||||||||| | | |||||| ||||  ||||||||||| |  | ||| |||||||||| |||||||  |||||    
T  22040234 tgtgtgcgtgagtattgcttctac-atcatgattcacgcaacaggattaagtttatattagaatcgattc-ttacgctatggatagatatttaatttgat 22040331  T
Q  130 actgcacagtaaa 142  Q
    |||||||||||||    
T  22040332 actgcacagtaaa 22040344  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 366
Target Start/End: Original strand, 21941606 - 21941655
Alignment:
Q  317 ttacattagtcactgttacttcagtgatgcataaatgcagcttagttcat 366  Q
    ||||||||||| |||||||||||||||| |||   |||||||||||||||    
T  21941606 ttacattagtccctgttacttcagtgatacatttgtgcagcttagttcat 21941655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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