View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2128_low_7 (Length: 328)
Name: NF2128_low_7
Description: NF2128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2128_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 290; Significance: 1e-163; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 13 - 310
Target Start/End: Complemental strand, 53278735 - 53278438
Alignment:
| Q |
13 |
aatatcagagggttcaaaatataaaatatattttttaagttcaatgagttcggttgaaccccctcatcatataaatatttcatgtaaaattatatacaat |
112 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53278735 |
aatatcaaagggttcaaaatataaaatatattttttaagttcaatgagttcggttgaaccccctcatcatataaatatttcatgtaaaattatatacaat |
53278636 |
T |
|
| Q |
113 |
tctataatcatttgatatggtatgagactcatcaagttcaataacatattaagtgattttataattgcgtaacattttagatgaatgatctatatgatat |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
53278635 |
tctataatcatttgatatggtatgagactcatcaagttcaataacatattaagtgattttatatttgcgtaacattttagatgaatgatctatatgatat |
53278536 |
T |
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| Q |
213 |
aagttttcaatccaactatgaattggtaataaaaagaagtgtcggattatacataccataattttggtaatttagaatgatgtcaagaagaggataat |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53278535 |
aagttttcaatccaactatgaattggtaataaaaagaagtgtcggattatacataccataattttggtaatttagaatgatgtcaagaagaggataat |
53278438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 93 - 133
Target Start/End: Original strand, 33335939 - 33335979
Alignment:
| Q |
93 |
catgtaaaattatatacaattctataatcatttgatatggt |
133 |
Q |
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| T |
33335939 |
catgtaaaattttatacaaatctaaaatcatttgatatggt |
33335979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 13 - 310
Target Start/End: Original strand, 11835917 - 11836213
Alignment:
| Q |
13 |
aatatcagagggttcaaaatataaaatatattttttaagttcaatgagttcggttgaaccccctcatcatataaatatttcatgtaaaattatatacaat |
112 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
11835917 |
aatatcaaagggttcaaaatataaaatatattttttaagttcaatcagttcggttgaacccc-tcatcatataaatatttcatgtaaaattatatacaat |
11836015 |
T |
|
| Q |
113 |
tctataatcatttgatatggtatgagactcatcaagttcaataacatattaagtgattttataattgcgtaacattttagatgaatgatctatatgatat |
212 |
Q |
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|||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
11836016 |
tctataattatttgatatggtatgagactcatcaagctcaataacatattaagtgattttatatttgcgtaacattttagatgaatgatctatatgatat |
11836115 |
T |
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| Q |
213 |
aagttttcaatccaactatgaattggtaataaaaagaagtgtcggattatacataccataattttggtaatttagaatgatgtcaagaagaggataat |
310 |
Q |
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|||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11836116 |
aagttttcaatccagctatgaactggtaataaaaagaagtgtcggattatacataccataattttggtaatttagaatgatgtcaagaagaggataat |
11836213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 150 - 214
Target Start/End: Original strand, 48467291 - 48467355
Alignment:
| Q |
150 |
tcaataacatattaagtgattttataattgcgtaacattttagatgaatgatctatatgatataa |
214 |
Q |
| |
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|||||||||||| || |||||||| | || ||||| |||||| |||||| ||||||||||||||| |
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| T |
48467291 |
tcaataacatataaaatgattttagattttcgtaaaattttacatgaataatctatatgatataa |
48467355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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