View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2128_low_8 (Length: 273)

Name: NF2128_low_8
Description: NF2128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2128_low_8
NF2128_low_8
[»] chr7 (3 HSPs)
chr7 (18-257)||(21868104-21868343)
chr7 (19-257)||(47022922-47023162)
chr7 (17-121)||(4057858-4057962)
[»] chr1 (2 HSPs)
chr1 (22-257)||(34917341-34917576)
chr1 (19-257)||(34024745-34024983)
[»] chr4 (5 HSPs)
chr4 (20-257)||(27366301-27366538)
chr4 (24-257)||(30200646-30200879)
chr4 (18-234)||(45113227-45113443)
chr4 (22-234)||(48944913-48945125)
chr4 (20-140)||(1838749-1838869)
[»] chr8 (4 HSPs)
chr8 (25-257)||(20266147-20266379)
chr8 (25-257)||(21052776-21053008)
chr8 (19-257)||(15362404-15362641)
chr8 (20-257)||(18166284-18166521)
[»] chr2 (2 HSPs)
chr2 (22-257)||(12335725-12335960)
chr2 (24-257)||(604161-604393)
[»] chr5 (4 HSPs)
chr5 (23-257)||(7955094-7955328)
chr5 (25-257)||(1592512-1592725)
chr5 (22-132)||(7771183-7771293)
chr5 (90-130)||(32470247-32470287)
[»] chr3 (3 HSPs)
chr3 (28-234)||(34147421-34147625)
chr3 (22-123)||(28983925-28984026)
chr3 (91-145)||(54298634-54298688)
[»] chr6 (2 HSPs)
chr6 (90-145)||(28888171-28888226)
chr6 (86-130)||(21091508-21091552)


Alignment Details
Target: chr7 (Bit Score: 172; Significance: 2e-92; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 18 - 257
Target Start/End: Complemental strand, 21868343 - 21868104
Alignment:
Q  18 actaagggggtgtttgtttggaagataaaaaatatatttctgggaataagggcattaaatacgatatttctatgtttggtagaagggaacaaaaataata 117  Q
    ||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  21868343 actaagggggtgtttgtttgggagataaaaaatatattcctgggaataagggcattaaatacgatattcctatgtttggtagaagggaacaaaaataata 21868244  T
Q  118 tacccaggaataaatgattcccaggaatcttatttacccgttcactctctatttttattcccnnnnnnnnnnnnctggaatcttcaattcctgggaatga 217  Q
    |||| |||||||||||||||| |||||||||||||||||||| |||||||||||||||||||            ||||||||||||||||||||||||||    
T  21868243 tacctaggaataaatgattcctaggaatcttatttacccgttgactctctatttttattcccgggggtggtgggctggaatcttcaattcctgggaatga 21868144  T
Q  218 aatctccacattcatggcaaaaacccacccatacccctat 257  Q
    |||||||||||||||||| ||||| |||||||||||||||    
T  21868143 aatctccacattcatggcgaaaactcacccatacccctat 21868104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 19 - 257
Target Start/End: Original strand, 47022922 - 47023162
Alignment:
Q  19 ctaagggggtgtttgtttggaagata---aaaaatatatttctgggaataagggcattaaatacgatatttctatgtttggtagaagggaacaaaaataa 115  Q
    |||| ||||||||||||||| |||||   ||||||||||| ||| ||||||||| ||||||||| ||||| |||| ||||||||||||||||||||||||    
T  47022922 ctaacggggtgtttgtttgggagatagtaaaaaatatattactgagaataagggtattaaatacaatattcctatatttggtagaagggaacaaaaataa 47023021  T
Q  116 tatacccaggaat-aaatgattcccaggaatcttatttacccgttcactctctatttttattcccnnnnnnnnnnnnctggaatcttcaattcctgggaa 214  Q
    ||||||||||||| |||||||||||| |||||||||| | ||||| ||||||||||||||||| |            |||||||||||||||||||| ||    
T  47023022 tatacccaggaataaaatgattccca-gaatcttattaatccgttgactctctatttttattctc-gggggtgggggctggaatcttcaattcctggaaa 47023119  T
Q  215 tgaaatctccacattcatggcaaaaacccacccatacccctat 257  Q
    |||||||| ||||||||||  ||||||||||||||||| ||||    
T  47023120 tgaaatcttcacattcatgctaaaaacccacccatacctctat 47023162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 17 - 121
Target Start/End: Original strand, 4057858 - 4057962
Alignment:
Q  17 cactaagggggtgtttgtttggaagataaaaaatatatttctgggaataagggcattaaatacgatatttctatgtttggtagaagggaacaaaaataat 116  Q
    |||| ||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4057858 cacttagggggtgtttgtttgggagataaaaaatatattcctgggaataagggcattaaatacgatatttctatgtttggtagaagggaacaaaaataat 4057957  T
Q  117 atacc 121  Q
    |||||    
T  4057958 atacc 4057962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 172; Significance: 2e-92; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 22 - 257
Target Start/End: Original strand, 34917341 - 34917576
Alignment:
Q  22 agggggtgtttgtttggaagataaaaaatatatttctgggaataagggcattaaatacgatatttctatgtttggtagaagggaacaaaaataatatacc 121  Q
    ||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  34917341 agggggtgtttgtttgggagataaaaaatatattcctgggaataagggcattaaatacgatattcctatgtttggtagaagggaacaaaaataatatacc 34917440  T
Q  122 caggaataaatgattcccaggaatcttatttacccgttcactctctatttttattcccnnnnnnnnnnnnctggaatcttcaattcctgggaatgaaatc 221  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||            ||||||||||||||||||||||||||||||    
T  34917441 caggaataaatgattcccaggaatcttatttacccgttgactctctatttttattcccgggggtggggggctggaatcttcaattcctgggaatgaaatc 34917540  T
Q  222 tccacattcatggcaaaaacccacccatacccctat 257  Q
    |||||||||||||  |||| ||||||||||||||||    
T  34917541 tccacattcatggtgaaaatccacccatacccctat 34917576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 19 - 257
Target Start/End: Original strand, 34024745 - 34024983
Alignment:
Q  19 ctaagggggtgtttgtttggaagataaaaaatatatttctgggaataagggcattaaatacgatatttctatgtttggtagaagggaacaaaaataatat 118  Q
    |||||||||||||||||||| |||||||||||||||| |||||||||| || ||||||||||||||| ||||||||||||||||||||||||||||||||    
T  34024745 ctaagggggtgtttgtttgggagataaaaaatatattcctgggaataaaggtattaaatacgatattcctatgtttggtagaagggaacaaaaataatat 34024844  T
Q  119 acccaggaataaatgattcccaggaatcttatttacccgttcactctctatttttattcccnnnnnnnnnnnnctggaatcttcaattcctgggaatgaa 218  Q
    || |||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| |            |||||||||||||||||||||||||||    
T  34024845 actcaggaataaatgattctcaggaatcttatttacccgttgactctctatttttattctcgggggtggtgggctggaatcttcaattcctgggaatgaa 34024944  T
Q  219 atctccacattcatggcaaaaacccacccatacccctat 257  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  34024945 atctccacattcatggcgaaaacccacccatacccctat 34024983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 170; Significance: 3e-91; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 20 - 257
Target Start/End: Complemental strand, 27366538 - 27366301
Alignment:
Q  20 taagggggtgtttgtttggaagataaaaaatatatttctgggaataagggcattaaatacgatatttctatgtttggtagaagggaacaaaaataatata 119  Q
    ||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  27366538 taagggggtgtttgtttgggagataaaaaatatattcctgggaataagggcattaaatacgatattcctatgtttggtagaagggaacaaaaataatata 27366439  T
Q  120 cccaggaataaatgattcccaggaatcttatttacccgttcactctctatttttattcccnnnnnnnnnnnnctggaatcttcaattcctgggaatgaaa 219  Q
    |||||||||||||||||  ||||||||||||||||||||| |||||||||||||||||||            ||||||||||||||||||||||||||||    
T  27366438 cccaggaataaatgattttcaggaatcttatttacccgttgactctctatttttattcccgggggtggggggctggaatcttcaattcctgggaatgaaa 27366339  T
Q  220 tctccacattcatggcaaaaacccacccatacccctat 257  Q
    |||||||||||||||  |||||||||||||||||||||    
T  27366338 tctccacattcatggtgaaaacccacccatacccctat 27366301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 24 - 257
Target Start/End: Complemental strand, 30200879 - 30200646
Alignment:
Q  24 ggggtgtttgtttggaagataaaaaatatatttctgggaataagggcattaaatacgatatttctatgtttggtagaagggaacaaaaataatataccca 123  Q
    ||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||    
T  30200879 ggggtgtttgtttgggagataaaaaatatattcctgggaataagggcattaaatacgatattcctatgtttggtagaagggaacaaaaataatatactca 30200780  T
Q  124 ggaataaatgattcccaggaatcttatttacccgttcactctctatttttattcccnnnnnnnnnnnnctggaatcttcaattcctgggaatgaaatctc 223  Q
    |||||||||||||| ||||||||||||||||||||| ||||||||||||||||| |             |||||||||||||||||||||||||||||||    
T  30200779 ggaataaatgattctcaggaatcttatttacccgttgactctctatttttattctcgggggtggggggatggaatcttcaattcctgggaatgaaatctc 30200680  T
Q  224 cacattcatggcaaaaacccacccatacccctat 257  Q
    |||||||||||| ||||||||||||| |||||||    
T  30200679 cacattcatggcgaaaacccacccatgcccctat 30200646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 18 - 234
Target Start/End: Complemental strand, 45113443 - 45113227
Alignment:
Q  18 actaagggggtgtttgtttggaagataaaaaatatatttctgggaataagggcattaaatacgatatttctatgtttggtagaagggaacaaaaataata 117  Q
    ||||||||||||||||||||| |||||||||||||||| ||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  45113443 actaagggggtgtttgtttgggagataaaaaatatattcctgagaataagggcattaaatacgatattcctatgtttggtagaagggaacaaaaataata 45113344  T
Q  118 tacccaggaataaatgattcccaggaatcttatttacccgttcactctctatttttattcccnnnnnnnnnnnnctggaatcttcaattcctgggaatga 217  Q
    ||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||            ||||||||||||||||||||||||||    
T  45113343 tacccaggaataaatgatttccaggaatcttatttacccgttgactctctatttttattcccggaggtggggggctggaatcttcaattcctgggaatga 45113244  T
Q  218 aatctccacattcatgg 234  Q
    |||||||||||||||||    
T  45113243 aatctccacattcatgg 45113227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 22 - 234
Target Start/End: Complemental strand, 48945125 - 48944913
Alignment:
Q  22 agggggtgtttgtttggaagataaaaaatatatttctgggaataagggcattaaatacgatatttctatgtttggtagaagggaacaaaaataatatacc 121  Q
    ||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48945125 agggggtgtttgtttgggagataaaaaatatattcctgggaataagggcattaaatacgatatttctatgtttggtagaagggaacaaaaataatatacc 48945026  T
Q  122 caggaataaatgattcccaggaatcttatttacccgttcactctctatttttattcccnnnnnnnnnnnnctggaatcttcaattcctgggaatgaaatc 221  Q
    |||||||||||||||||||||||||||||| |||| || ||||||||||||||||||             |||||||||||||||||||| |||||||||    
T  48945025 caggaataaatgattcccaggaatcttattaacccattgactctctatttttattccttgggttggggggctggaatcttcaattcctggaaatgaaatc 48944926  T
Q  222 tccacattcatgg 234  Q
    |||||||| ||||    
T  48944925 tccacatttatgg 48944913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 20 - 140
Target Start/End: Complemental strand, 1838869 - 1838749
Alignment:
Q  20 taagggggtgtttgtttggaagataaaaaatatatttctgggaataagggcattaaatacgatatttctatgtttggtagaagggaacaaaaataatata 119  Q
    ||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||    
T  1838869 taagggggtgtttgtttgggagataaaaaatatatttctaggaataagggcattaaatacgatattcctatatttggtagaagggaacaaaaataatata 1838770  T
Q  120 cccaggaataaatgattccca 140  Q
    |||||||||||||||||||||    
T  1838769 cccaggaataaatgattccca 1838749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 169; Significance: 1e-90; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 25 - 257
Target Start/End: Original strand, 20266147 - 20266379
Alignment:
Q  25 gggtgtttgtttggaagataaaaaatatatttctgggaataagggcattaaatacgatatttctatgtttggtagaagggaacaaaaataatatacccag 124  Q
    |||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20266147 gggtgtttgtttgggagataaaaaatatatttctaggaataagggcattaaatacgatatttctatgtttggtagaagggaacaaaaataatatacccag 20266246  T
Q  125 gaataaatgattcccaggaatcttatttacccgttcactctctatttttattcccnnnnnnnnnnnnctggaatcttcaattcctgggaatgaaatctcc 224  Q
    |||||| |||||||||||||||||||||||||||| |||||||||||||||||||            ||||||||||||||||||| |||||||||||||    
T  20266247 gaataattgattcccaggaatcttatttacccgttgactctctatttttattcccgagggtggggggctggaatcttcaattcctgagaatgaaatctcc 20266346  T
Q  225 acattcatggcaaaaacccacccatacccctat 257  Q
    ||||||||||  |||||||||||||||||||||    
T  20266347 acattcatggtgaaaacccacccatacccctat 20266379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 25 - 257
Target Start/End: Original strand, 21052776 - 21053008
Alignment:
Q  25 gggtgtttgtttggaagataaaaaatatatttctgggaataagggcattaaatacgatatttctatgtttggtagaagggaacaaaaataatatacccag 124  Q
    |||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21052776 gggtgtttgtttgggagataaaaaatatatttctaggaataagggcattaaatacgatatttctatgtttggtagaagggaacaaaaataatatacccag 21052875  T
Q  125 gaataaatgattcccaggaatcttatttacccgttcactctctatttttattcccnnnnnnnnnnnnctggaatcttcaattcctgggaatgaaatctcc 224  Q
    |||||| |||||||||||||||||||||||||||| |||||||||||||||||||            ||||||||||||||||||| |||||||||||||    
T  21052876 gaataattgattcccaggaatcttatttacccgttgactctctatttttattcccgagggtggggggctggaatcttcaattcctgagaatgaaatctcc 21052975  T
Q  225 acattcatggcaaaaacccacccatacccctat 257  Q
    ||||||||||  |||||||||||||||||||||    
T  21052976 acattcatggtgaaaacccacccatacccctat 21053008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 19 - 257
Target Start/End: Original strand, 15362404 - 15362641
Alignment:
Q  19 ctaagggggtgtttgtttggaagataaaaaatatatttctgggaataagggcattaaatacgatatttctatgtttggtagaagggaacaaaaataatat 118  Q
    |||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||    
T  15362404 ctaagggggtgtttgtttgggagataaaaaatatattcctgggaataagggcattaaatatgatattcctatgtttggtagaagggaacaaaaataatat 15362503  T
Q  119 acccaggaataaatgattcccaggaatcttatttacccgttcactctctatttttattcccnnnnnnnnnnnnctggaatcttcaattcctgggaatgaa 218  Q
    ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| ||            |||||||||||||||||||||||||||    
T  15362504 acccaggaataaatgattcccaggaatcttatttatccgttgactctctatttttatt-ccaggggtggggggctggaatcttcaattcctgggaatgaa 15362602  T
Q  219 atctccacattcatggcaaaaacccacccatacccctat 257  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  15362603 atctccacattcatggcgaaaacccacccatacccctat 15362641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 20 - 257
Target Start/End: Original strand, 18166284 - 18166521
Alignment:
Q  20 taagggggtgtttgtttggaagataaaaaatatatttctgggaataagggcattaaatacgatatttctatgtttggtagaagggaacaaaaataatata 119  Q
    ||||||||||||||||||| |||||||||||||||| ||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  18166284 taagggggtgtttgtttgggagataaaaaatatattcctgtgaataagggcattaaatacgatattcctatgtttggtagaagggaacaaaaataatata 18166383  T
Q  120 cccaggaataaatgattcccaggaatcttatttacccgttcactctctatttttattcccnnnnnnnnnnnnctggaatcttcaattcctgggaatgaaa 219  Q
    |||| ||||||||||||| ||||||||||||||||||||| ||||||||||||||||| |            ||||||||||||||||||||||||||||    
T  18166384 cccaagaataaatgattcacaggaatcttatttacccgttgactctctatttttattctcgggggtggtgggctggaatcttcaattcctgggaatgaaa 18166483  T
Q  220 tctccacattcatggcaaaaacccacccatacccctat 257  Q
    |||||||||||||||| |||||||||||||||| ||||    
T  18166484 tctccacattcatggcgaaaacccacccataccgctat 18166521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 168; Significance: 4e-90; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 22 - 257
Target Start/End: Original strand, 12335725 - 12335960
Alignment:
Q  22 agggggtgtttgtttggaagataaaaaatatatttctgggaataagggcattaaatacgatatttctatgtttggtagaagggaacaaaaataatatacc 121  Q
    ||||||||||||||||| |||||||||||||||| |||| |||||| |||||||||| |||||| |||||||||||||||||||||||||||||||||||    
T  12335725 agggggtgtttgtttgggagataaaaaatatattcctggaaataagagcattaaatatgatattcctatgtttggtagaagggaacaaaaataatatacc 12335824  T
Q  122 caggaataaatgattcccaggaatcttatttacccgttcactctctatttttattcccnnnnnnnnnnnnctggaatcttcaattcctgggaatgaaatc 221  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||            ||||||||||||||||||||||||||||||    
T  12335825 caggaataaatgattcccaggaatcttatttacccgttgactctctatttttattcccgggggtggggggctggaatcttcaattcctgggaatgaaatc 12335924  T
Q  222 tccacattcatggcaaaaacccacccatacccctat 257  Q
    |||||||||||||| |||||||||||||||||||||    
T  12335925 tccacattcatggcgaaaacccacccatacccctat 12335960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 24 - 257
Target Start/End: Complemental strand, 604393 - 604161
Alignment:
Q  24 ggggtgtttgtttggaagataaaaaatatatttctgggaataagggcattaaatacgatatttctatgtttggtagaagggaacaaaaataatataccca 123  Q
    ||||||||||||||| ||| ||||||||||||| || |||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| ||    
T  604393 ggggtgtttgtttgggaga-aaaaaatatatttatgagaataagggcattaaatatgatattcctatgtttggtagaagggaacaaaaataatatactca 604295  T
Q  124 ggaataaatgattcccaggaatcttatttacccgttcactctctatttttattcccnnnnnnnnnnnnctggaatcttcaattcctgggaatgaaatctc 223  Q
    |||||||||||||  ||||||||||||||||| ||| ||||||||||||||||  |             |||||||||||||||||||||||||||||||    
T  604294 ggaataaatgattttcaggaatcttatttacctgttgactctctatttttattttcgggggtggggggttggaatcttcaattcctgggaatgaaatctc 604195  T
Q  224 cacattcatggcaaaaacccacccatacccctat 257  Q
    |||||||||||  |||||||||||||||| ||||    
T  604194 cacattcatggtgaaaacccacccatacctctat 604161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 163; Significance: 4e-87; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 23 - 257
Target Start/End: Original strand, 7955094 - 7955328
Alignment:
Q  23 gggggtgtttgtttggaagataaaaaatatatttctgggaataagggcattaaatacgatatttctatgtttggtagaagggaacaaaaataatataccc 122  Q
    |||||||||||||||| |||||||||||||||| ||||| |||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||    
T  7955094 gggggtgtttgtttgggagataaaaaatatattcctgggtataagggcattaaatatgatattcctatgtttggtagaagggaacaaaaataatataccc 7955193  T
Q  123 aggaataaatgattcccaggaatcttatttacccgttcactctctatttttattcccnnnnnnnnnnnnctggaatcttcaattcctgggaatgaaatct 222  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||            ||||||||||||||||||| |||||||||||    
T  7955194 aggaataaatgattcccaggaatcttatttacccgttgactctctatttttattcccgggggtggggggctggaatcttcaattcctgagaatgaaatct 7955293  T
Q  223 ccacattcatggcaaaaacccacccatacccctat 257  Q
    ||||||||||| | |||||||||||||||||||||    
T  7955294 ccacattcatgacgaaaacccacccatacccctat 7955328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 25 - 257
Target Start/End: Original strand, 1592512 - 1592725
Alignment:
Q  25 gggtgtttgtttggaagataaaaaatatatttctgggaataagggcattaaatacgatatttctatgtttggtagaagggaacaaaaataatatacccag 124  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||         
T  1592512 gggtgtttgtttgggagataaaaaatatatttctgggaataagggcattaaatacgatattcctatgtttggtagaagggaacaaaaataatata----- 1592606  T
Q  125 gaataaatgattcccaggaatcttatttacccgttcactctctatttttattcccnnnnnnnnnnnnctggaatcttcaattcctgggaatgaaatctcc 224  Q
                |||| |||||| ||||||||||| |||||||||||||| | ||            ||||||||||||||||| |||||||||||||||    
T  1592607 ------------cccatgaatctaatttacccgttgactctctatttttaat-ccgggggtggcgggctggaatcttcaattcc-gggaatgaaatctcc 1592692  T
Q  225 acattcatggcaaaaacccacccatacccctat 257  Q
    ||||||||||| |||| ||||||||||||||||    
T  1592693 acattcatggcgaaaatccacccatacccctat 1592725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 22 - 132
Target Start/End: Complemental strand, 7771293 - 7771183
Alignment:
Q  22 agggggtgtttgtttggaagataaaaaatatatttctgggaataagggcattaaatacgatatttctatgtttggtagaagggaacaaaaataatatacc 121  Q
    ||||||||||||||||| ||||||||||||||||  | ||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||     
T  7771293 agggggtgtttgtttgggagataaaaaatatattcttaggaataaggacattaaatacgatatttctatgtttggtagaaggaaacaaaaataatatact 7771194  T
Q  122 caggaataaat 132  Q
    ||| |||||||    
T  7771193 cagaaataaat 7771183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 90 - 130
Target Start/End: Complemental strand, 32470287 - 32470247
Alignment:
Q  90 tgtttggtagaagggaacaaaaataatatacccaggaataa 130  Q
    |||||||||||| ||||||||||||||||||| ||||||||    
T  32470287 tgtttggtagaaaggaacaaaaataatatacctaggaataa 32470247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 116; Significance: 4e-59; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 28 - 234
Target Start/End: Original strand, 34147421 - 34147625
Alignment:
Q  28 tgtttgtttggaagataaaaaatatatttctgggaataagggcattaaatacgatatttctatgtttggtagaagggaacaaaaataatatacccaggaa 127  Q
    ||||||||||| |||||||||||||||| |||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||    
T  34147421 tgtttgtttgggagataaaaaatatattcctgggaataatggcattaaatacgatattcctatgtttggtagaagggaacaaaaataatatacctaggaa 34147520  T
Q  128 taaatgattcccaggaatcttatttacccgttcactctctatttttattcccnnnnnnnnnnnnctggaatcttcaattcctgggaatgaaatctccaca 227  Q
    |||||||||||||||||||||||| |||| || |  |||||||||||||||             |||||||||||||||||||| |||||||||||||||    
T  34147521 taaatgattcccaggaatcttattaacccattga--ctctatttttattcctggggttggggggctggaatcttcaattcctggaaatgaaatctccaca 34147618  T
Q  228 ttcatgg 234  Q
    || ||||    
T  34147619 tttatgg 34147625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 22 - 123
Target Start/End: Complemental strand, 28984026 - 28983925
Alignment:
Q  22 agggggtgtttgtttggaagataaaaaatatatttctgggaataagggcattaaatacgatatttctatgtttggtagaagggaacaaaaataatatacc 121  Q
    ||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||| |||||||||||||||| ||||||||| ||||||||    
T  28984026 agggggtgtttgtttgggagataaaaaatatatttatgagaataagggcattaaatacgatattcctatgtttggtagaagcgaacaaaaaaaatatacc 28983927  T
Q  122 ca 123  Q
    ||    
T  28983926 ca 28983925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 145
Target Start/End: Original strand, 54298634 - 54298688
Alignment:
Q  91 gtttggtagaagggaacaaaaataatatacccaggaataaatgattcccaggaat 145  Q
    ||||||||||| |||||||||||||||| || |||||||||| || || ||||||    
T  54298634 gtttggtagaaaggaacaaaaataatatgcctaggaataaataataccaaggaat 54298688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 90 - 145
Target Start/End: Complemental strand, 28888226 - 28888171
Alignment:
Q  90 tgtttggtagaagggaacaaaaataatatacccaggaataaatgattcccaggaat 145  Q
    |||||||||||| ||||||||||||||||||||| |||||||| || |||||||||    
T  28888226 tgtttggtagaaaggaacaaaaataatatacccaagaataaataatacccaggaat 28888171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 86 - 130
Target Start/End: Original strand, 21091508 - 21091552
Alignment:
Q  86 tctatgtttggtagaagggaacaaaaataatatacccaggaataa 130  Q
    |||||||||||||||| ||||||||||||||||||| ||||||||    
T  21091508 tctatgtttggtagaaaggaacaaaaataatatacctaggaataa 21091552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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