View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21290_high_10 (Length: 255)

Name: NF21290_high_10
Description: NF21290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21290_high_10
NF21290_high_10
[»] chr4 (13 HSPs)
chr4 (1-122)||(7875473-7875594)
chr4 (4-122)||(7871735-7871853)
chr4 (15-93)||(21224144-21224222)
chr4 (15-97)||(21232263-21232345)
chr4 (15-93)||(21225697-21225775)
chr4 (7-54)||(10034253-10034300)
chr4 (46-97)||(7890267-7890318)
chr4 (43-93)||(6547320-6547370)
chr4 (36-97)||(6589450-6589511)
chr4 (36-97)||(6756958-6757019)
chr4 (36-86)||(6726426-6726476)
chr4 (36-97)||(6771699-6771760)
chr4 (36-97)||(6814267-6814328)
[»] chr7 (2 HSPs)
chr7 (36-94)||(36215321-36215379)
chr7 (38-83)||(34727174-34727219)
[»] chr6 (11 HSPs)
chr6 (35-84)||(5395557-5395606)
chr6 (35-83)||(5068514-5068562)
chr6 (35-83)||(5094555-5094603)
chr6 (36-84)||(5183391-5183439)
chr6 (35-83)||(5348889-5348937)
chr6 (35-94)||(5424267-5424326)
chr6 (38-83)||(5148399-5148444)
chr6 (34-83)||(5368973-5369022)
chr6 (35-83)||(5104312-5104360)
chr6 (35-83)||(5158941-5158989)
chr6 (35-83)||(5342208-5342256)
[»] chr5 (1 HSPs)
chr5 (38-83)||(8876318-8876363)


Alignment Details
Target: chr4 (Bit Score: 118; Significance: 3e-60; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 7875594 - 7875473
Alignment:
Q  1 agttgtgaacaaactttgatgatttagatggtaatgagaaagaaatattccttgatatagctaatttatttattgggatggacaaagatgatgtaatcaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7875594 agttgtgaacaaactttgatgatttagatggtaatgagaaagaaatattccttgatatagctaatttatttattgggatggacaaagatgatgtaatcaa 7875495  T
Q  101 tgttgaatattttggatttact 122  Q
    |||||||||||||| |||||||    
T  7875494 tgttgaatattttgaatttact 7875473  T

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Target: chr4; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 4 - 122
Target Start/End: Complemental strand, 7871853 - 7871735
Alignment:
Q  4 tgtgaacaaactttgatgatttagatggtaatgagaaagaaatattccttgatatagctaatttatttattgggatggacaaagatgatgtaatcaatgt 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  7871853 tgtgaacaaactttgatgatttagatggtaatgagaaagaaatattccttgatatagctaatttatttattgggatggacatagatgatgtaatcaatgt 7871754  T
Q  104 tgaatattttggatttact 122  Q
    |||||||||||||||||||    
T  7871753 tgaatattttggatttact 7871735  T

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Target: chr4; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 15 - 93
Target Start/End: Original strand, 21224144 - 21224222
Alignment:
Q  15 tttgatgatttagatggtaatgagaaagaaatattccttgatatagctaatttatttattgggatggacaaagatgatg 93  Q
    |||||||||||||||||| |||||||| | | |||||||||| |||||| |||||||||||||||||||||||||||||    
T  21224144 tttgatgatttagatggttatgagaaaaacacattccttgatgtagctactttatttattgggatggacaaagatgatg 21224222  T

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Target: chr4; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 15 - 97
Target Start/End: Original strand, 21232263 - 21232345
Alignment:
Q  15 tttgatgatttagatggtaatgagaaagaaatattccttgatatagctaatttatttattgggatggacaaagatgatgtaat 97  Q
    |||||| ||||||||||| |||||||| | | |||||||||| |||||| |||||||||| ||||||||||||||||||||||    
T  21232263 tttgataatttagatggttatgagaaaaacacattccttgatgtagctactttatttattaggatggacaaagatgatgtaat 21232345  T

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Target: chr4; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 15 - 93
Target Start/End: Original strand, 21225697 - 21225775
Alignment:
Q  15 tttgatgatttagatggtaatgagaaagaaatattccttgatatagctaatttatttattgggatggacaaagatgatg 93  Q
    |||||| ||||||||||| |||||||| | | |||||||||| |||||| |||||||||||||||||| ||||||||||    
T  21225697 tttgataatttagatggttatgagaaaaacacattccttgatgtagctactttatttattgggatggagaaagatgatg 21225775  T

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Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 7 - 54
Target Start/End: Original strand, 10034253 - 10034300
Alignment:
Q  7 gaacaaactttgatgatttagatggtaatgagaaagaaatattccttg 54  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||    
T  10034253 gaacaaactttgatgatttagatgacaatgagaaagaaatattccttg 10034300  T

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Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 46 - 97
Target Start/End: Complemental strand, 7890318 - 7890267
Alignment:
Q  46 tattccttgatatagctaatttatttattgggatggacaaagatgatgtaat 97  Q
    |||||||| | ||||||| |||||||||||||||| ||||||||||||||||    
T  7890318 tattccttaaaatagctactttatttattgggatgcacaaagatgatgtaat 7890267  T

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Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 43 - 93
Target Start/End: Complemental strand, 6547370 - 6547320
Alignment:
Q  43 aaatattccttgatatagctaatttatttattgggatggacaaagatgatg 93  Q
    ||||||||||||||||||||  ||| |||||||||||||||||| ||||||    
T  6547370 aaatattccttgatatagcttgtttctttattgggatggacaaaaatgatg 6547320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 36 - 97
Target Start/End: Complemental strand, 6589511 - 6589450
Alignment:
Q  36 gagaaagaaatattccttgatatagctaatttatttattgggatggacaaagatgatgtaat 97  Q
    |||||| |||||||||||||||| |||  ||| |||||||||||||||||| | ||||||||    
T  6589511 gagaaacaaatattccttgatattgcttgtttctttattgggatggacaaaaaggatgtaat 6589450  T

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Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 36 - 97
Target Start/End: Original strand, 6756958 - 6757019
Alignment:
Q  36 gagaaagaaatattccttgatatagctaatttatttattgggatggacaaagatgatgtaat 97  Q
    |||||| ||||||||||||||||||||  ||| |||||||||| ||||| | ||||||||||    
T  6756958 gagaaacaaatattccttgatatagcttgtttctttattgggaaggacagaaatgatgtaat 6757019  T

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Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 86
Target Start/End: Original strand, 6726426 - 6726476
Alignment:
Q  36 gagaaagaaatattccttgatatagctaatttatttattgggatggacaaa 86  Q
    |||||| ||||||| ||||||||||||  ||| ||||||||||||||||||    
T  6726426 gagaaacaaatatttcttgatatagcttgtttctttattgggatggacaaa 6726476  T

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Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 36 - 97
Target Start/End: Original strand, 6771699 - 6771760
Alignment:
Q  36 gagaaagaaatattccttgatatagctaatttatttattgggatggacaaagatgatgtaat 97  Q
    |||||| ||||||||||||||||||||  ||| ||||||||| | |||||| | ||||||||    
T  6771699 gagaaacaaatattccttgatatagcttgtttctttattggggtagacaaaaaggatgtaat 6771760  T

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Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 36 - 97
Target Start/End: Original strand, 6814267 - 6814328
Alignment:
Q  36 gagaaagaaatattccttgatatagctaatttatttattgggatggacaaagatgatgtaat 97  Q
    |||||| ||||||||||||||||||||  ||| |||||||||| ||||  | ||||||||||    
T  6814267 gagaaacaaatattccttgatatagcttgtttctttattgggagggaccgaaatgatgtaat 6814328  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 36 - 94
Target Start/End: Complemental strand, 36215379 - 36215321
Alignment:
Q  36 gagaaagaaatattccttgatatagctaatttatttattgggatggacaaagatgatgt 94  Q
    |||||||||||||||||||| ||||||  ||| |||||||||||||||| | |||||||    
T  36215379 gagaaagaaatattccttgacatagcttgtttctttattgggatggacagaaatgatgt 36215321  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 38 - 83
Target Start/End: Complemental strand, 34727219 - 34727174
Alignment:
Q  38 gaaagaaatattccttgatatagctaatttatttattgggatggac 83  Q
    ||||||||||||||||||||| |||  ||| |||||||||||||||    
T  34727219 gaaagaaatattccttgatattgcttttttctttattgggatggac 34727174  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 35 - 84
Target Start/End: Original strand, 5395557 - 5395606
Alignment:
Q  35 tgagaaagaaatattccttgatatagctaatttatttattgggatggaca 84  Q
    ||||||||||||||||||||| ||||||  ||| ||||||||||||||||    
T  5395557 tgagaaagaaatattccttgacatagcttgtttttttattgggatggaca 5395606  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 83
Target Start/End: Complemental strand, 5068562 - 5068514
Alignment:
Q  35 tgagaaagaaatattccttgatatagctaatttatttattgggatggac 83  Q
    ||||||||||||||||||||| ||||||  ||| |||||||||||||||    
T  5068562 tgagaaagaaatattccttgacatagcttgtttctttattgggatggac 5068514  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 83
Target Start/End: Original strand, 5094555 - 5094603
Alignment:
Q  35 tgagaaagaaatattccttgatatagctaatttatttattgggatggac 83  Q
    |||||||||||||||||||||| |||||  ||| |||||||||||||||    
T  5094555 tgagaaagaaatattccttgatgtagcttgtttctttattgggatggac 5094603  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 84
Target Start/End: Complemental strand, 5183439 - 5183391
Alignment:
Q  36 gagaaagaaatattccttgatatagctaatttatttattgggatggaca 84  Q
    |||||||||||||||||||| ||||||  ||| ||||||||||||||||    
T  5183439 gagaaagaaatattccttgacatagcttgtttctttattgggatggaca 5183391  T

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Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 83
Target Start/End: Original strand, 5348889 - 5348937
Alignment:
Q  35 tgagaaagaaatattccttgatatagctaatttatttattgggatggac 83  Q
    ||||||||||||||||||||| ||||||  ||| |||||||||||||||    
T  5348889 tgagaaagaaatattccttgacatagcttgtttctttattgggatggac 5348937  T

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Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 35 - 94
Target Start/End: Original strand, 5424267 - 5424326
Alignment:
Q  35 tgagaaagaaatattccttgatatagctaatttatttattgggatggacaaagatgatgt 94  Q
    ||||||||||||||||||||| ||||||  ||| |||||||| ||||||| | |||||||    
T  5424267 tgagaaagaaatattccttgacatagcttgtttctttattggaatggacagaaatgatgt 5424326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 38 - 83
Target Start/End: Complemental strand, 5148444 - 5148399
Alignment:
Q  38 gaaagaaatattccttgatatagctaatttatttattgggatggac 83  Q
    |||||||||||||||||| ||||||  ||| |||||||||||||||    
T  5148444 gaaagaaatattccttgacatagcttgtttctttattgggatggac 5148399  T

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Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 34 - 83
Target Start/End: Original strand, 5368973 - 5369022
Alignment:
Q  34 atgagaaagaaatattccttgatatagctaatttatttattgggatggac 83  Q
    ||||||||||||||||||||||| |||||  ||| |||||||||| ||||    
T  5368973 atgagaaagaaatattccttgatgtagcttgtttctttattgggaaggac 5369022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 83
Target Start/End: Complemental strand, 5104360 - 5104312
Alignment:
Q  35 tgagaaagaaatattccttgatatagctaatttatttattgggatggac 83  Q
    |||||||||||||||||| ||| |||||  ||| |||||||||||||||    
T  5104360 tgagaaagaaatattcctcgatgtagcttgtttctttattgggatggac 5104312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 83
Target Start/End: Complemental strand, 5158989 - 5158941
Alignment:
Q  35 tgagaaagaaatattccttgatatagctaatttatttattgggatggac 83  Q
    |||||||||||||||||||||| |||||  ||| ||||| |||||||||    
T  5158989 tgagaaagaaatattccttgatgtagcttgtttctttatagggatggac 5158941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 83
Target Start/End: Original strand, 5342208 - 5342256
Alignment:
Q  35 tgagaaagaaatattccttgatatagctaatttatttattgggatggac 83  Q
    ||||||||||||||| ||||| ||||||  ||| |||||||||||||||    
T  5342208 tgagaaagaaatatttcttgacatagcttgtttctttattgggatggac 5342256  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 38 - 83
Target Start/End: Original strand, 8876318 - 8876363
Alignment:
Q  38 gaaagaaatattccttgatatagctaatttatttattgggatggac 83  Q
    |||||||||||||||||| ||||||  ||| |||||||||||||||    
T  8876318 gaaagaaatattccttgacatagcttgtttctttattgggatggac 8876363  T

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