View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21290_high_14 (Length: 206)
Name: NF21290_high_14
Description: NF21290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21290_high_14 |
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Alignment Details
Target: chr5 (Bit Score: 168; Significance: 3e-90; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 19 - 190
Target Start/End: Complemental strand, 29990703 - 29990532
Alignment:
| Q |
19 |
tgctcctataagtttcggtcggtttgcgaaaacgatgtcatgggttttgaggaatgattctgctgcttttgaagatgaaatgacaattgttggaacttga |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29990703 |
tgctcctataagtttcggtcggtttgcgaaaacgatgtcatgggttttgaggaatgattctgctgcttttgaagatgaaatgacaattgttggaacttgt |
29990604 |
T |
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| Q |
119 |
ccaagttgtaaagacataattggaccatattttttggagagtgattgaagtgttctatgtggaagtttgcct |
190 |
Q |
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| T |
29990603 |
ccaagttgtaaagacataattggaccatattttttggagagtgattgaagtgttctatgtggaagtttgcct |
29990532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 32 - 186
Target Start/End: Complemental strand, 29999394 - 29999240
Alignment:
| Q |
32 |
ttcggtcggtttgcgaaaacgatgtcatgggttttgaggaatgattctgctgcttttgaagatgaaatgacaattgttggaacttgaccaagttgtaaag |
131 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| | |
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| T |
29999394 |
ttcggtcggcttgcgaaaacgatgtcatgggttttgaggaatgattctgctccttttgaagatgaaataacaattgttggaacttgaccaagttgtaagg |
29999295 |
T |
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| Q |
132 |
acataattggaccatattttttggagagtgattgaagtgttctatgtggaagttt |
186 |
Q |
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| T |
29999294 |
acatgattggaccatatcttttggagagtgattgaagtgttctatgtggaagttt |
29999240 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 35 - 190
Target Start/End: Original strand, 30071155 - 30071310
Alignment:
| Q |
35 |
ggtcggtttgcgaaaacgatgtcatgggttttgaggaatgattctgctgcttttgaagatgaaatgacaattgttggaacttgaccaagttgtaaagaca |
134 |
Q |
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| T |
30071155 |
ggtcggcttgcaaaaacgatgtcatgggttttgagaaatgattctgcagcttttgaagatgaaatgataatagttggaacttgaccaagttgtaaggaca |
30071254 |
T |
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| Q |
135 |
taattggaccatattttttggagagtgattgaagtgttctatgtggaagtttgcct |
190 |
Q |
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| T |
30071255 |
tgattggaccatattttttggagagtgattgaagtgttctatgtggaagtttgcct |
30071310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 121; E-Value: 3e-62
Query Start/End: Original strand, 42 - 190
Target Start/End: Complemental strand, 30005822 - 30005674
Alignment:
| Q |
42 |
ttgcgaaaacgatgtcatgggttttgaggaatgattctgctgcttttgaagatgaaatgacaattgttggaacttgaccaagttgtaaagacataattgg |
141 |
Q |
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|||| |||||||||||||| |||||||||||||||||||| ||||||||||||||||||| ||| ||||||||||||||||||||||| ||||| ||||| |
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| T |
30005822 |
ttgcaaaaacgatgtcatgagttttgaggaatgattctgcagcttttgaagatgaaatgataatagttggaacttgaccaagttgtaaggacatgattgg |
30005723 |
T |
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| Q |
142 |
accatattttttggagagtgattgaagtgttctatgtggaagtttgcct |
190 |
Q |
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| T |
30005722 |
accatattttttggagagtgattgaagtgttctatgtggaagtttgcct |
30005674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 16 - 183
Target Start/End: Complemental strand, 29943875 - 29943708
Alignment:
| Q |
16 |
ctgtgctcctataagtttcggtcggtttgcgaaaacgatgtcatgggttttgaggaatgattctgctgcttttgaagatgaaatgacaattgttggaact |
115 |
Q |
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||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||| ||||| ||||||||||||||||||||||| | ||| ||| |
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| T |
29943875 |
ctgtgctcctacaagttccggtcggtttgcgaaaacgatgtcatgggttttgacgaatgactctgcggcttttgaagatgaaatgacaatagctgggact |
29943776 |
T |
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| Q |
116 |
tgaccaagttgtaaagacataattggaccatattttttggagagtgattgaagtgttctatgtggaag |
183 |
Q |
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| T |
29943775 |
tgacctagttgtaaggacatgattggaccatattgtttggagagtgattgaagtgttctatgtggaag |
29943708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 117; E-Value: 8e-60
Query Start/End: Original strand, 35 - 183
Target Start/End: Original strand, 30045325 - 30045473
Alignment:
| Q |
35 |
ggtcggtttgcgaaaacgatgtcatgggttttgaggaatgattctgctgcttttgaagatgaaatgacaattgttggaacttgaccaagttgtaaagaca |
134 |
Q |
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|||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||||||||||||||| |||| |
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| T |
30045325 |
ggtcggcttgcgaaaacgatgtcgtgggttttgaggaatgattctgctgcttttgaagatgaaatgacaatagctgggacttgaccaagttgtaaggaca |
30045424 |
T |
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| Q |
135 |
taattggaccatattttttggagagtgattgaagtgttctatgtggaag |
183 |
Q |
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| T |
30045425 |
tgattggaccatattttttggagagtgactgaagtgttctatgtggaag |
30045473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 52 - 186
Target Start/End: Complemental strand, 29963065 - 29962931
Alignment:
| Q |
52 |
gatgtcatgggttttgaggaatgattctgctgcttttgaagatgaaatgacaattgttggaacttgaccaagttgtaaagacataattggaccatatttt |
151 |
Q |
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||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||| |||||||||| |
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| T |
29963065 |
gatgtcatgagttttgaggaatgattctgcagcttttgaagatgaaataacaattgttggaacttgaccaagttgtaaggacatgattgaaccatatttt |
29962966 |
T |
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| Q |
152 |
ttggagagtgattgaagtgttctatgtggaagttt |
186 |
Q |
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||||| ||||||||||||||||||||||||||||| |
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| T |
29962965 |
ttggacagtgattgaagtgttctatgtggaagttt |
29962931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 52 - 186
Target Start/End: Original strand, 30011733 - 30011867
Alignment:
| Q |
52 |
gatgtcatgggttttgaggaatgattctgctgcttttgaagatgaaatgacaattgttggaacttgaccaagttgtaaagacataattggaccatatttt |
151 |
Q |
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||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||| |||||||||| |
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| T |
30011733 |
gatgtcatgagttttgaggaatgattctgcagcttttgaagatgaaataacaattgttggaacttgaccaagttgtaaggacatgattgaaccatatttt |
30011832 |
T |
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| Q |
152 |
ttggagagtgattgaagtgttctatgtggaagttt |
186 |
Q |
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||||| ||||||||||||||||||||||||||||| |
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| T |
30011833 |
ttggacagtgattgaagtgttctatgtggaagttt |
30011867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 52 - 186
Target Start/End: Complemental strand, 29949507 - 29949373
Alignment:
| Q |
52 |
gatgtcatgggttttgaggaatgattctgctgcttttgaagatgaaatgacaattgttggaacttgaccaagttgtaaagacataattggaccatatttt |
151 |
Q |
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|||||| || |||||||||||||||||||| ||||||||||| ||||| | ||||||||||||||||||||||||||| ||||| ||||||||||||||| |
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| T |
29949507 |
gatgtcgtgagttttgaggaatgattctgcagcttttgaagaagaaattataattgttggaacttgaccaagttgtaaggacatgattggaccatatttt |
29949408 |
T |
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| Q |
152 |
ttggagagtgattgaagtgttctatgtggaagttt |
186 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
29949407 |
ttggagagtgattgaagtgttctatgtggaagttt |
29949373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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