View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21290_high_6 (Length: 357)
Name: NF21290_high_6
Description: NF21290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21290_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 14 - 340
Target Start/End: Original strand, 40508687 - 40509013
Alignment:
| Q |
14 |
catcaaattcccccaaaaaatccaccaacaccatcagcatcacctccacaacatcaagtaccaaagatatctccacagttatcaccaaatggttctgctc |
113 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40508687 |
catcaaattcccccacaaaatccaccaacaccatcagcatcacctccacaacatcaagtaccaaagatatctccacagttatcaccaaatggttctgctc |
40508786 |
T |
|
| Q |
114 |
ctcaacctagtggtggcacgagtaaccctccggtacctataaatgtaccatctcctactcctgtaggtggtaatgttgggtgtcctcctacaccatcttc |
213 |
Q |
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||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40508787 |
ctcaacctagtggtggcacgagtaaccctccagcacctataaatgtaccatctcctactcctgtaggtggtaatgttgggtgtcctcctacaccatcttc |
40508886 |
T |
|
| Q |
214 |
cattcatggggtgaagtctaatattgatgtggcattattggtttgtgctatgtttggtacattcctaggattttggatgatgtaggatagagcaggacat |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
40508887 |
cattcatggggtgaagtctaatattgatgtggcattattggtttgtgctatgtttggtacattcctaggattttggatgatgtaggatagggcaggacat |
40508986 |
T |
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| Q |
314 |
tttcaaggtgctttttagattatattt |
340 |
Q |
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||||||||||||||||||||||||||| |
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| T |
40508987 |
tttcaaggtgctttttagattatattt |
40509013 |
T |
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