View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21290_low_11 (Length: 251)

Name: NF21290_low_11
Description: NF21290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21290_low_11
NF21290_low_11
[»] scaffold0002 (4 HSPs)
scaffold0002 (1-239)||(132102-132362)
scaffold0002 (132-239)||(142469-142576)
scaffold0002 (3-78)||(142282-142357)
scaffold0002 (81-131)||(142396-142446)
[»] chr3 (9 HSPs)
chr3 (1-239)||(13174626-13174886)
chr3 (2-239)||(13337562-13337827)
chr3 (132-239)||(13164412-13164519)
chr3 (132-239)||(13347557-13347664)
chr3 (3-78)||(13347774-13347849)
chr3 (3-78)||(13164631-13164706)
chr3 (81-131)||(13164542-13164592)
chr3 (147-192)||(13400509-13400554)
chr3 (87-131)||(13347687-13347731)


Alignment Details
Target: scaffold0002 (Bit Score: 181; Significance: 7e-98; HSPs: 4)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 132102 - 132362
Alignment:
Q  1 aaaatcaaaatagataagtaaatacaaactgaagctttgtgacatacatttatgttgccagcaactcttgttcttataatcaaatctctgtgtatggact 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  132102 aaaatcaaaatagataagtaaatacaaactgaagctttgtgacatacatttatgttgccagcaactcttgttcttataaccaaatctctgtgtatggact 132201  T
Q  101 ttgcacgccttaccgatgacaaacctat--------------taaaa--------tggcttcgaaaacattataagtttaatctcaactaggatcaagaa 178  Q
    ||||||||||||||||||||||||||||              |||||        |||||||||||||||||||||||||||||||||||||||||||||    
T  132202 ttgcacgccttaccgatgacaaacctattaacaacaaaagaataaaaattagcgatggcttcgaaaacattataagtttaatctcaactaggatcaagaa 132301  T
Q  179 tatgattttaaaaatttaaactggttttcaataggattataagaaagaattatttgttctt 239  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  132302 tatgattttaaaaatttaaactggttttcaataggattataagaaagaattatttgttctt 132362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 132 - 239
Target Start/End: Original strand, 142469 - 142576
Alignment:
Q  132 aatggcttcgaaaacattataagtttaatctcaactaggatcaagaatatgattttaaaaatttaaactggttttcaataggattataagaaagaattat 231  Q
    ||||||||||||||||||||||||||||||| ||||||||| ||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||  |    
T  142469 aatggcttcgaaaacattataagtttaatcttaactaggattaagaataggattttaaaaaattaaactggttttcaataggattttaagaaagaatatt 142568  T
Q  232 ttgttctt 239  Q
    ||||||||    
T  142569 ttgttctt 142576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 3 - 78
Target Start/End: Original strand, 142282 - 142357
Alignment:
Q  3 aatcaaaatagataagtaaatacaaactgaagctttgtgacatacatttatgttgccagcaactcttgttcttata 78  Q
    ||||||||||||||||||| |||||||||||||||| ||||||||||| |||||||||| || |||| ||||||||    
T  142282 aatcaaaatagataagtaagtacaaactgaagctttatgacatacattaatgttgccagtaattcttattcttata 142357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 81 - 131
Target Start/End: Original strand, 142396 - 142446
Alignment:
Q  81 caaatctctgtgtatggactttgcacgccttaccgatgacaaacctattaa 131  Q
    |||||||||||| ||| ||||||||||||||||||||||||||||||||||    
T  142396 caaatctctgtgaatgcactttgcacgccttaccgatgacaaacctattaa 142446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 181; Significance: 7e-98; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 13174886 - 13174626
Alignment:
Q  1 aaaatcaaaatagataagtaaatacaaactgaagctttgtgacatacatttatgttgccagcaactcttgttcttataatcaaatctctgtgtatggact 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  13174886 aaaatcaaaatagataagtaaatacaaactgaagctttgtgacatacatttatgttgccagcaactcttgttcttataaccaaatctctgtgtatggact 13174787  T
Q  101 ttgcacgccttaccgatgacaaacctat--------------taaaa--------tggcttcgaaaacattataagtttaatctcaactaggatcaagaa 178  Q
    ||||||||||||||||||||||||||||              |||||        |||||||||||||||||||||||||||||||||||||||||||||    
T  13174786 ttgcacgccttaccgatgacaaacctattaacaacaaaagaataaaaattagcgatggcttcgaaaacattataagtttaatctcaactaggatcaagaa 13174687  T
Q  179 tatgattttaaaaatttaaactggttttcaataggattataagaaagaattatttgttctt 239  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13174686 tatgattttaaaaatttaaactggttttcaataggattataagaaagaattatttgttctt 13174626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 2 - 239
Target Start/End: Complemental strand, 13337827 - 13337562
Alignment:
Q  2 aaatcaaaatagataagtaaatacaaactgaa------gctttgtgacatacatttatgttgccagcaactcttgttcttataatcaaatctctgtgtat 95  Q
    |||||||||||||||||||| |||||||||||      ||||||||||||||||||||||||||||||||||||||||||||||  | ||||||||||||    
T  13337827 aaatcaaaatagataagtaactacaaactgaaactgaagctttgtgacatacatttatgttgccagcaactcttgttcttataacgagatctctgtgtat 13337728  T
Q  96 ggactttgcacgccttaccgatgacaaacctattaa----------------------aatggcttcgaaaacattataagtttaatctcaactaggatc 173  Q
    ||||||||||||||||||||||||||||||||||||                      ||||||||||||||||||||||||||||||||||||||||||    
T  13337727 ggactttgcacgccttaccgatgacaaacctattaacaacaaaagaataaaaattaacaatggcttcgaaaacattataagtttaatctcaactaggatc 13337628  T
Q  174 aagaatatgattttaaaaatttaaactggttttcaataggattataagaaagaattatttgttctt 239  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||  |||||||||    
T  13337627 aagaatatgattttaaaaatttaaactggttttcaataggattttaagaaagaatattttgttctt 13337562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 132 - 239
Target Start/End: Complemental strand, 13164519 - 13164412
Alignment:
Q  132 aatggcttcgaaaacattataagtttaatctcaactaggatcaagaatatgattttaaaaatttaaactggttttcaataggattataagaaagaattat 231  Q
    ||||||||||||||||||||||||||||||| ||||||||| ||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||  |    
T  13164519 aatggcttcgaaaacattataagtttaatcttaactaggattaagaataggattttaaaaaattaaactggttttcaataggattttaagaaagaatatt 13164420  T
Q  232 ttgttctt 239  Q
    ||||||||    
T  13164419 ttgttctt 13164412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 132 - 239
Target Start/End: Complemental strand, 13347664 - 13347557
Alignment:
Q  132 aatggcttcgaaaacattataagtttaatctcaactaggatcaagaatatgattttaaaaatttaaactggttttcaataggattataagaaagaattat 231  Q
    ||||||||| ||||||||||||||||||||| ||||||||| ||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||  |    
T  13347664 aatggcttcaaaaacattataagtttaatcttaactaggattaagaataggattttaaaaaattaaactggttttcaataggattttaagaaagaatatt 13347565  T
Q  232 ttgttctt 239  Q
    ||||||||    
T  13347564 ttgttctt 13347557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 3 - 78
Target Start/End: Complemental strand, 13347849 - 13347774
Alignment:
Q  3 aatcaaaatagataagtaaatacaaactgaagctttgtgacatacatttatgttgccagcaactcttgttcttata 78  Q
    ||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| || |||| ||||||||    
T  13347849 aatcaaaatagataagtaagtacaaactgaagctttatgacatacatttatgttgccagtaattcttattcttata 13347774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 3 - 78
Target Start/End: Complemental strand, 13164706 - 13164631
Alignment:
Q  3 aatcaaaatagataagtaaatacaaactgaagctttgtgacatacatttatgttgccagcaactcttgttcttata 78  Q
    ||||||||||||||||||| |||||||||||||||| ||||||||||| |||||||||| || |||| ||||||||    
T  13164706 aatcaaaatagataagtaagtacaaactgaagctttatgacatacattaatgttgccagtaattcttattcttata 13164631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 81 - 131
Target Start/End: Complemental strand, 13164592 - 13164542
Alignment:
Q  81 caaatctctgtgtatggactttgcacgccttaccgatgacaaacctattaa 131  Q
    |||||||||||| ||| ||||||||||||||||||||||||||||||||||    
T  13164592 caaatctctgtgaatgcactttgcacgccttaccgatgacaaacctattaa 13164542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 147 - 192
Target Start/End: Complemental strand, 13400554 - 13400509
Alignment:
Q  147 attataagtttaatctcaactaggatcaagaatatgattttaaaaa 192  Q
    ||||||||||||||||| ||||||||||| ||||||||||||||||    
T  13400554 attataagtttaatctctactaggatcaacaatatgattttaaaaa 13400509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 87 - 131
Target Start/End: Complemental strand, 13347731 - 13347687
Alignment:
Q  87 tctgtgtatggactttgcacgccttaccgatgacaaacctattaa 131  Q
    |||||||||| ||||||||||||| ||||||||||||||||||||    
T  13347731 tctgtgtatgcactttgcacgcctcaccgatgacaaacctattaa 13347687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University