View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21290_low_12 (Length: 237)

Name: NF21290_low_12
Description: NF21290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21290_low_12
NF21290_low_12
[»] scaffold0002 (2 HSPs)
scaffold0002 (19-105)||(132009-132095)
scaffold0002 (185-221)||(131857-131893)
[»] chr3 (7 HSPs)
chr3 (19-105)||(13174893-13174979)
chr3 (19-98)||(13337833-13337912)
chr3 (47-106)||(40268545-40268604)
chr3 (185-221)||(13175095-13175131)
chr3 (185-221)||(13338035-13338071)
chr3 (49-104)||(49494108-49494163)
chr3 (47-104)||(47454577-47454634)
[»] chr4 (1 HSPs)
chr4 (36-104)||(30938168-30938236)
[»] chr2 (1 HSPs)
chr2 (47-105)||(42602612-42602670)
[»] chr8 (1 HSPs)
chr8 (49-93)||(25058611-25058655)


Alignment Details
Target: scaffold0002 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 19 - 105
Target Start/End: Complemental strand, 132095 - 132009
Alignment:
Q  19 ctccatattttgattagttttcttttaatgaagaagctaaattaaactaccgaaattggcatcggggagaatcaaacctcagacctt 105  Q
    |||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| |||||| ||||||    
T  132095 ctccatattttgattagttttcttttaatgaagaagctaaattagattaccgaaattggcatcggggagaatcgaacctcggacctt 132009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 185 - 221
Target Start/End: Complemental strand, 131893 - 131857
Alignment:
Q  185 cataagcactaactgtgacaatatttaccttactaat 221  Q
    |||||||||||||||||||||||||||||||| ||||    
T  131893 cataagcactaactgtgacaatatttaccttattaat 131857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 71; Significance: 3e-32; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 19 - 105
Target Start/End: Original strand, 13174893 - 13174979
Alignment:
Q  19 ctccatattttgattagttttcttttaatgaagaagctaaattaaactaccgaaattggcatcggggagaatcaaacctcagacctt 105  Q
    |||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| |||||| ||||||    
T  13174893 ctccatattttgattagttttcttttaatgaagaagctaaattagattaccgaaattggcatcggggagaatcgaacctcggacctt 13174979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 19 - 98
Target Start/End: Original strand, 13337833 - 13337912
Alignment:
Q  19 ctccatattttgattagttttcttttaatgaagaagctaaattaaactaccgaaattggcatcggggagaatcaaacctc 98  Q
    |||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| ||||||    
T  13337833 ctccatattttgattagttttcttttaatgaagaagctaaattagattaccgaaattggcatcggggagaatcgaacctc 13337912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 47 - 106
Target Start/End: Complemental strand, 40268604 - 40268545
Alignment:
Q  47 tgaagaagctaaattaaactaccgaaattggcatcggggagaatcaaacctcagacctta 106  Q
    ||||||||||||| ||| | ||||||||||||||||||||||||| ||||| ||||||||    
T  40268604 tgaagaagctaaactaacccaccgaaattggcatcggggagaatcgaacctgagacctta 40268545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 185 - 221
Target Start/End: Original strand, 13175095 - 13175131
Alignment:
Q  185 cataagcactaactgtgacaatatttaccttactaat 221  Q
    |||||||||||||||||||||||||||||||| ||||    
T  13175095 cataagcactaactgtgacaatatttaccttattaat 13175131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 185 - 221
Target Start/End: Original strand, 13338035 - 13338071
Alignment:
Q  185 cataagcactaactgtgacaatatttaccttactaat 221  Q
    |||||||||||||||||||||||||||||||| ||||    
T  13338035 cataagcactaactgtgacaatatttaccttattaat 13338071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 49 - 104
Target Start/End: Original strand, 49494108 - 49494163
Alignment:
Q  49 aagaagctaaattaaactaccgaaattggcatcggggagaatcaaacctcagacct 104  Q
    ||||||||||||||| ||| | | ||||||||| ||||||||||||||| ||||||    
T  49494108 aagaagctaaattaatctatctagattggcatcagggagaatcaaacctgagacct 49494163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 47 - 104
Target Start/End: Original strand, 47454577 - 47454634
Alignment:
Q  47 tgaagaagctaaattaaactaccgaaattggcatcggggagaatcaaacctcagacct 104  Q
    ||||||||||||| ||| | ||| |||||||||| |||||||||| ||||| ||||||    
T  47454577 tgaagaagctaaactaacccacctaaattggcattggggagaatcgaacctgagacct 47454634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 104
Target Start/End: Original strand, 30938168 - 30938236
Alignment:
Q  36 ttttcttttaatgaagaagctaaattaaactaccgaaattggcatcggggagaatcaaacctcagacct 104  Q
    |||||||||  ||||||||||||| ||| | ||| |||||||||| |||||||||| ||||| ||||||    
T  30938168 ttttctttttttgaagaagctaaactaacccacctaaattggcattggggagaatcgaacctgagacct 30938236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 105
Target Start/End: Complemental strand, 42602670 - 42602612
Alignment:
Q  47 tgaagaagctaaattaaactaccgaaattggcatcggggagaatcaaacctcagacctt 105  Q
    ||||||||||||||||  | ||| ||||||||| ||| ||||||||||||| |||||||    
T  42602670 tgaagaagctaaattagcccacccaaattggcaccggagagaatcaaacctaagacctt 42602612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 93
Target Start/End: Original strand, 25058611 - 25058655
Alignment:
Q  49 aagaagctaaattaaactaccgaaattggcatcggggagaatcaa 93  Q
    ||||||||||||||| | ||| ||| |||||||||||||||||||    
T  25058611 aagaagctaaattaatccacctaaagtggcatcggggagaatcaa 25058655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University