View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21290_low_13 (Length: 215)
Name: NF21290_low_13
Description: NF21290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21290_low_13 |
 | |
|
| [»] chr4 (5 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 7875792 - 7875578
Alignment:
| Q |
1 |
ttcttagttggcatgcattcaaaactccaagtccaacggaaagttacgccgatctttgtaaagattctgtagagtattgtgggggattgccgctggctct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| |
|
|
| T |
7875792 |
ttcttagttggcatgcattcaaaactccaagtccaacggaaagttacgccgatctttgtaaagattatgtagagtactgtgggggattgccgctggctct |
7875693 |
T |
|
| Q |
101 |
tgaagtcattaggtcttttttgctggatagatctgtagcagagtggaagaatgcactgaagaaactcaaaaccattcccaacgatatcataattggaaag |
200 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7875692 |
tgaagtcattaggtcttttttgctggataaatctgtagcagagtggaagaatgcactgaagaaactcaaaaccattcccaacgatatcataattggaaag |
7875593 |
T |
|
| Q |
201 |
ttgtgaacaaacttt |
215 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
7875592 |
ttgtgaacaaacttt |
7875578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 7872054 - 7871840
Alignment:
| Q |
1 |
ttcttagttggcatgcattcaaaactccaagtccaacggaaagttacgccgatctttgtaaagattctgtagagtattgtgggggattgccgctggctct |
100 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| |||||||||| |
|
|
| T |
7872054 |
ttcttggttggcatgcattcaaaactccaagtccaacggaaagttacgccgatctttgtaaagattatgtagagtactgtgggggattgtcgctggctct |
7871955 |
T |
|
| Q |
101 |
tgaagtcattaggtcttttttgctggatagatctgtagcagagtggaagaatgcactgaagaaactcaaaaccattcccaacgatatcataattggaaag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7871954 |
tgaagtcattaggtcttttttgctggatagatctgtagcagagtggaagaatgcactgaagaaactcaaaaccattcccaacgatatcataattggaaag |
7871855 |
T |
|
| Q |
201 |
ttgtgaacaaacttt |
215 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
7871854 |
ctgtgaacaaacttt |
7871840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 106 - 215
Target Start/End: Original strand, 10034154 - 10034263
Alignment:
| Q |
106 |
tcattaggtcttttttgctggatagatctgtagcagagtggaagaatgcactgaagaaactcaaaaccattcccaacgatatcataattggaaagttgtg |
205 |
Q |
| |
|
||||| ||||||||||||| | ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| ||||| || | |
|
|
| T |
10034154 |
tcattgggtcttttttgctaggtagatctgtagcagagtggaagagtgcactagagaaactcaaaaccattcccaacgatatcataatgcgaaagctgag |
10034253 |
T |
|
| Q |
206 |
aacaaacttt |
215 |
Q |
| |
|
|||||||||| |
|
|
| T |
10034254 |
aacaaacttt |
10034263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 4 - 177
Target Start/End: Complemental strand, 7890558 - 7890385
Alignment:
| Q |
4 |
ttagttggcatgcattcaaaactccaagtccaacggaaagttacgccgatctttgtaaagattctgtagagtattgtgggggattgccgctggctcttga |
103 |
Q |
| |
|
|||||||||||||||||| |||||||||||| | ||||||||||| || ||||||| |||| ||| ||||| |||||||| |||||| | |||||||| |
|
|
| T |
7890558 |
ttagttggcatgcattcagaactccaagtcctaaagaaagttacgctgacctttgtagagatgttgttgagtactgtggggggttgccggtagctcttga |
7890459 |
T |
|
| Q |
104 |
agtcattaggtcttttttgctggatagatctgtagcagagtggaagaatgcactgaagaaactcaaaaccattc |
177 |
Q |
| |
|
| || || |||||| |||| | || ||||||||| ||||||||||| |||||| ||||| |||||||||||| |
|
|
| T |
7890458 |
aatccttgggtcttatttgtttgacagatctgtacaagagtggaagattgcactccagaaattcaaaaccattc |
7890385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 179
Target Start/End: Original strand, 21232133 - 21232227
Alignment:
| Q |
85 |
gattgccgctggctcttgaagtcattaggtcttttttgctggatagatctgtagcagagtggaagaatgcactgaagaaactcaaaaccattccc |
179 |
Q |
| |
|
|||||||||| ||||||||||| || | ||||||||| | ||| ||||||||| | ||||||| || |||| |||||||||||| ||||||| |
|
|
| T |
21232133 |
gattgccgctagctcttgaagttataggatcttttttgtttgatgaatctgtagcggtgtggaagtttgtactggagaaactcaaaatcattccc |
21232227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University