View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21290_low_2 (Length: 733)

Name: NF21290_low_2
Description: NF21290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21290_low_2
NF21290_low_2
[»] chr2 (8 HSPs)
chr2 (311-579)||(13826993-13827263)
chr2 (19-225)||(13827349-13827540)
chr2 (580-678)||(13826791-13826889)
chr2 (72-141)||(13822652-13822721)
chr2 (602-683)||(13814209-13814290)
chr2 (171-219)||(29108796-29108844)
chr2 (417-448)||(13822564-13822595)
chr2 (329-366)||(13822621-13822658)
[»] chr7 (1 HSPs)
chr7 (139-218)||(24495335-24495414)
[»] chr5 (2 HSPs)
chr5 (169-218)||(22732006-22732055)
chr5 (182-225)||(7313270-7313313)
[»] chr3 (1 HSPs)
chr3 (171-225)||(31064585-31064639)
[»] chr1 (2 HSPs)
chr1 (169-218)||(27919167-27919216)
chr1 (177-225)||(42887975-42888023)
[»] scaffold0735 (1 HSPs)
scaffold0735 (177-225)||(928-976)
[»] chr4 (1 HSPs)
chr4 (169-225)||(47089205-47089261)
[»] chr8 (4 HSPs)
chr8 (169-224)||(15021381-15021436)
chr8 (169-215)||(6599500-6599546)
chr8 (169-215)||(6674953-6674999)
chr8 (169-223)||(12493427-12493481)
[»] chr6 (1 HSPs)
chr6 (177-219)||(31330522-31330564)


Alignment Details
Target: chr2 (Bit Score: 157; Significance: 4e-83; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 157; E-Value: 4e-83
Query Start/End: Original strand, 311 - 579
Target Start/End: Complemental strand, 13827263 - 13826993
Alignment:
Q  311 tactgattaacatgaccctatatattattttaaacaaatggaccagcccaacaaagnnnnnnnnnnncaaacaa-gaaagattaaaagctcttaggatat 409  Q
    ||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||           ||||||| |||| ||||||||||||||||||||    
T  13827263 tactggttaacgtgaccttatatattattttaaacaaatggaccagcccaacaaagaaaaaaaaa--caaacaaagaaaaattaaaagctcttaggatat 13827166  T
Q  410 tccctcaaaaaagctcctaggatatgaaacatatttttttattaaagnnnnnnnnnnngaaacttatttttataagct----tggtaaaagggactaatt 505  Q
    |||||||||||||||||||||||||||||||||||||||||||||||           ||||||||||||||||||||    ||||||||||||||||||    
T  13827165 tccctcaaaaaagctcctaggatatgaaacatatttttttattaaagaaaaaaaaaa-gaaacttatttttataagctaatatggtaaaagggactaatt 13827067  T
Q  506 catgaaacaaaagtaaaaacattatcccttggccaattaaatcaatactgaatttagcaaagcaattatccaca 579  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13827066 catgaaacaaaagtaaaaacattatcccttggccaattaaatcaatactgaatttagcaaagcaattatccaca 13826993  T

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Target: chr2; HSP #2
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 19 - 225
Target Start/End: Complemental strand, 13827540 - 13827349
Alignment:
Q  19 atcatttctcttatcaattttaatttaccctcccaatcccattccacatgatatacctaacaatgcttttattaaatttaaggtgtagaggctagaaaca 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||    
T  13827540 atcatttctcttatcaattttaatttaccctcccaatcccattccacatgatatacctaacaatgcttttattaaatttaaggggtagaggctaggaaca 13827441  T
Q  119 atgttagttcctaccatatatattagggaaatgttaattagtatgtcggaggcactagttaaagaattataagaagaaatattttcttgaaaattgtgta 218  Q
    |||||||               |||  ||||||||||||||||||||| |||||||| ||||  ||||||||||||||||||||| ||||||||||||||    
T  13827440 atgttag---------------ttaaagaaatgttaattagtatgtcgaaggcactatttaagaaattataagaagaaatatttttttgaaaattgtgta 13827356  T

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Target: chr2; HSP #3
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 580 - 678
Target Start/End: Complemental strand, 13826889 - 13826791
Alignment:
Q  580 ttacctttttcaccctattcatttctcagcatgtctctacattttgaaagttttgtcggacttttcaatttctgttactataaaaatatctctttatag 678  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||    
T  13826889 ttacctttttcaccctattcatttctcagcatgtctttacattttgaaagttttgtcggacttttcaatttctatttctataaaaatatctctttatag 13826791  T

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Target: chr2; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 72 - 141
Target Start/End: Complemental strand, 13822721 - 13822652
Alignment:
Q  72 tacctaacaatgcttttattaaatttaaggtgtagaggctagaaacaatgttagttcctaccatatatat 141  Q
    ||||| |||||||||||||||||||||||| ||||||||||||||||||||||| |||||| ||||||||    
T  13822721 tacctgacaatgcttttattaaatttaaggggtagaggctagaaacaatgttagctcctacaatatatat 13822652  T

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Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 602 - 683
Target Start/End: Complemental strand, 13814290 - 13814209
Alignment:
Q  602 ttctcagcatgtctctacattttgaaagttttgtcggacttttcaatttctgttactataaaa-atatctctttatagatttg 683  Q
    |||||||||||||| ||||||||| ||||||||| || ||||||||||| | ||||||||||| |||| ||||||| ||||||    
T  13814290 ttctcagcatgtctttacattttgtaagttttgttggtcttttcaattt-tattactataaaagatatttctttatggatttg 13814209  T

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Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 171 - 219
Target Start/End: Complemental strand, 29108844 - 29108796
Alignment:
Q  171 cactagttaaagaattataagaagaaatattttcttgaaaattgtgtat 219  Q
    |||| ||||| ||||||||| | ||||||||||||||||||||||||||    
T  29108844 cactggttaaggaattataaaaggaaatattttcttgaaaattgtgtat 29108796  T

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Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 417 - 448
Target Start/End: Complemental strand, 13822595 - 13822564
Alignment:
Q  417 aaaaagctcctaggatatgaaacatatttttt 448  Q
    ||||||||||||||||||||||||||||||||    
T  13822595 aaaaagctcctaggatatgaaacatatttttt 13822564  T

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Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 329 - 366
Target Start/End: Complemental strand, 13822658 - 13822621
Alignment:
Q  329 tatatattattttaaacaaatggaccagcccaacaaag 366  Q
    |||||||  |||||||||||||||||||||||||||||    
T  13822658 tatatatatttttaaacaaatggaccagcccaacaaag 13822621  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 139 - 218
Target Start/End: Complemental strand, 24495414 - 24495335
Alignment:
Q  139 tattagggaaatgttaattagtatgtcggaggcactagttaaagaattataagaagaaatattttcttgaaaattgtgta 218  Q
    |||||| ||||||||||  ||||| || |||||||| ||||||||||||||| |  ||||||| ||||||||||||||||    
T  24495414 tattagagaaatgttaacaagtatctccgaggcacttgttaaagaattataaaagaaaatattatcttgaaaattgtgta 24495335  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 169 - 218
Target Start/End: Complemental strand, 22732055 - 22732006
Alignment:
Q  169 ggcactagttaaagaattataagaagaaatattttcttgaaaattgtgta 218  Q
    ||||||||||||||||| |||| | |||||||||||||||||||||||||    
T  22732055 ggcactagttaaagaatcataaaaggaaatattttcttgaaaattgtgta 22732006  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 182 - 225
Target Start/End: Complemental strand, 7313313 - 7313270
Alignment:
Q  182 gaattataagaagaaatattttcttgaaaattgtgtatgttact 225  Q
    ||||||||| |||||||||||||||||||||||||||| |||||    
T  7313313 gaattataaaaagaaatattttcttgaaaattgtgtatattact 7313270  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 171 - 225
Target Start/End: Complemental strand, 31064639 - 31064585
Alignment:
Q  171 cactagttaaagaattataagaagaaatattttcttgaaaattgtgtatgttact 225  Q
    |||||||||| ||||||||| |||||| ||||| ||||||||||||||| |||||    
T  31064639 cactagttaaggaattataaaaagaaacatttttttgaaaattgtgtattttact 31064585  T

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Target: chr1 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 169 - 218
Target Start/End: Complemental strand, 27919216 - 27919167
Alignment:
Q  169 ggcactagttaaagaattataagaagaaatattttcttgaaaattgtgta 218  Q
    |||||| ||||||||||||||| | |||||||||||||||||||| ||||    
T  27919216 ggcacttgttaaagaattataaaaggaaatattttcttgaaaattatgta 27919167  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 177 - 225
Target Start/End: Original strand, 42887975 - 42888023
Alignment:
Q  177 ttaaagaattataagaagaaatattttcttgaaaattgtgtatgttact 225  Q
    |||||||||||||| | |||||||||||||||||||| ||||| |||||    
T  42887975 ttaaagaattataaaaggaaatattttcttgaaaattatgtattttact 42888023  T

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Target: scaffold0735 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0735
Description:

Target: scaffold0735; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 177 - 225
Target Start/End: Original strand, 928 - 976
Alignment:
Q  177 ttaaagaattataagaagaaatattttcttgaaaattgtgtatgttact 225  Q
    |||||||||||||| | |||||||||||||||||||| ||||| |||||    
T  928 ttaaagaattataaaaggaaatattttcttgaaaattatgtattttact 976  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 169 - 225
Target Start/End: Original strand, 47089205 - 47089261
Alignment:
Q  169 ggcactagttaaagaattataagaagaaatattttcttgaaaattgtgtatgttact 225  Q
    |||||| ||||| ||||||||| | ||||| |||||||||||||||||||| |||||    
T  47089205 ggcactggttaaggaattataaaaggaaatgttttcttgaaaattgtgtattttact 47089261  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 224
Target Start/End: Complemental strand, 15021436 - 15021381
Alignment:
Q  169 ggcactagttaaagaattataagaagaaatattttcttgaaaattgtgtatgttac 224  Q
    ||||||||||||| ||||||||||  |||| |||||| ||||||||||||| ||||    
T  15021436 ggcactagttaaaaaattataagagaaaatgttttctcgaaaattgtgtattttac 15021381  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 169 - 215
Target Start/End: Original strand, 6599500 - 6599546
Alignment:
Q  169 ggcactagttaaagaattataagaagaaatattttcttgaaaattgt 215  Q
    |||||||||||| ||||||||| || ||||||||||||| |||||||    
T  6599500 ggcactagttaaggaattataaaaataaatattttcttgtaaattgt 6599546  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 169 - 215
Target Start/End: Original strand, 6674953 - 6674999
Alignment:
Q  169 ggcactagttaaagaattataagaagaaatattttcttgaaaattgt 215  Q
    |||||||||||| ||||||||| || ||||||||||||| |||||||    
T  6674953 ggcactagttaaggaattataaaaataaatattttcttgtaaattgt 6674999  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 169 - 223
Target Start/End: Complemental strand, 12493481 - 12493427
Alignment:
Q  169 ggcactagttaaagaattataagaagaaatattttcttgaaaattgtgtatgtta 223  Q
    |||||||||||| ||||||||| ||||||| |||||||  ||||| |||||||||    
T  12493481 ggcactagttaaggaattataaaaagaaatgttttcttagaaattatgtatgtta 12493427  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 177 - 219
Target Start/End: Original strand, 31330522 - 31330564
Alignment:
Q  177 ttaaagaattataagaagaaatattttcttgaaaattgtgtat 219  Q
    |||||||||||||||| ||||| || |||||||||||||||||    
T  31330522 ttaaagaattataagaggaaattttgtcttgaaaattgtgtat 31330564  T

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