View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21290_low_3 (Length: 678)
Name: NF21290_low_3
Description: NF21290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21290_low_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 203; Significance: 1e-110; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 19 - 354
Target Start/End: Original strand, 3513855 - 3514188
Alignment:
| Q |
19 |
aaatgtcctaaatttgtaagaaatcaatcgttgatacgaagcaaaaattgagtttttgatccatccttaaact--ttataagtctttaatttgcatttca |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
3513855 |
aaatgtcctaaatttgtaagaaatcaatcgttgatacgaagcaaaaattgagcttttgatccatccttaaactctttataagtctttaatttgcatttca |
3513954 |
T |
|
| Q |
117 |
taagaaacacctcttattgtttgaaaaattagatatagaaatattacaagggaaatgatatcatgtgacctaatgacacatgttaaagagttggggnnnn |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| ||| |
|
|
| T |
3513955 |
taagaaacacctcttattgtttgaaaaattagacatagaaatattacaagggaaatgatatcatgtaacctaatgacatatgttaaagagtttggg-aaa |
3514053 |
T |
|
| Q |
217 |
nnngtggagaatatgctaaacttctcctggttggttagaggagtaaaaatgagacnnnnnnnnnnnnnnnttatgaaattcacacaagaagaaaaaatag |
316 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| ||||||||||| || |
|
|
| T |
3514054 |
aaagcggagaatatgctaaacttctcctggttggttagaggagtaaaaatgagac---aaaaaaaataaattgtgaaattcacactagaagaaaaaacag |
3514150 |
T |
|
| Q |
317 |
catgaacaagttacttacatttttagttgtaggttata |
354 |
Q |
| |
|
|||||||| |||||| ||||||||||||||||||||| |
|
|
| T |
3514151 |
tatgaacaaattactttcatttttagttgtaggttata |
3514188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 158; E-Value: 1e-83
Query Start/End: Original strand, 351 - 568
Target Start/End: Original strand, 3515929 - 3516146
Alignment:
| Q |
351 |
tatattctttactccctttccggttagattacacaatgtcaatattgaaagaagaagaagaaagcacaaattagggatctaaataaatattatacgatga |
450 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3515929 |
tatattctttactccctttccggttagattacacaatgttaatattgaaagaagaagaagaaagcacaaattagggatctaaataaatattatacgatga |
3516028 |
T |
|
| Q |
451 |
tatttgtatcgtcatgttggataactataatatccatacccgtcatttattcatttcagtatatattaaatggatgatcgatgaattttaaagtatccct |
550 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| |||||| ||||| |||||||||| |||||||||||| ||||| ||||||||| |||||||||| |
|
|
| T |
3516029 |
tatttgtattgtcatgttggataactataatattcataccagtcatatattcatttcggtatatattaaacatatgatttatgaattttgaagtatccct |
3516128 |
T |
|
| Q |
551 |
gaatctttacgaataccc |
568 |
Q |
| |
|
|| ||||| || |||||| |
|
|
| T |
3516129 |
gagtctttccggataccc |
3516146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University