View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21290_low_5 (Length: 369)
Name: NF21290_low_5
Description: NF21290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21290_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 22 - 353
Target Start/End: Complemental strand, 32276814 - 32276474
Alignment:
| Q |
22 |
tatctattatgatgtttttgcaatgattagtct--catcatttctaaaatgttgtaattgtgtcacact--tacaaatcatggtgatcatgtctcaaatc |
117 |
Q |
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| T |
32276814 |
tatctattatgatgtttttgcaatgattagtctttcatcatttctaaaatgttgtaattgtgtcacacaggtacaaatcatggtgatcatgtctcaaatc |
32276715 |
T |
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| Q |
118 |
aattgttagatggtttaacattaatatactatgaatgtgcgttgtctcccatatagtacaatatcaatttttcatttcccatattaaaatggaatcattt |
217 |
Q |
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| T |
32276714 |
aattgttagatggtttaacattaatatactatgaatgtgcgttgtctcccatatagtacaatatcaatttttcatttcccatattaaaatggaatcattt |
32276615 |
T |
|
| Q |
218 |
ctaaatttatgacaaccgacatgctaatagaaacaaaatgcttactcc-----gtgaagttcacagaatgtaccaaaaaacaaactgtcacaacaatcac |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32276614 |
ctaaatttatgacaaccgacatgctaatagaaacaaaatgcttactccgtgacgtgaagttcacagaatgtaccaaaaaacaaactgtcacaacaatcac |
32276515 |
T |
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| Q |
313 |
actgatataattactgctgtcaattttttgcctttttaaaa |
353 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
32276514 |
actgatataattactgctgtcaattttttgcctttttaaaa |
32276474 |
T |
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