View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21290_low_7 (Length: 331)
Name: NF21290_low_7
Description: NF21290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21290_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 300
Target Start/End: Complemental strand, 14918143 - 14917846
Alignment:
| Q |
1 |
agaatgatttgaatctctaatgatggctagggttggttggaggctttcacaaagagaacccaataaaccaacaccctcaatcctatcaatattgctcgga |
100 |
Q |
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| T |
14918143 |
agaatgatttgaatctctaatgatggctagggttgattggaggcttgcacaaagagaacccaataaaccaacaccctcaatcctatcaatattgctcgga |
14918044 |
T |
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| Q |
101 |
aatactctcctcaaattaagaatacagattttcttaatttctcgttactaatttttcannnnnnnnnncctaaagcaatcataaaaaacttcttgtatat |
200 |
Q |
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| T |
14918043 |
aatactctcctcaaattaagaaaacagattttcttaatttctcgttactaatttttca-ttttcttttcctaaagcaatcataaaagacttcttgtatat |
14917945 |
T |
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| Q |
201 |
tcctcacgtcttcattttggtgttaaaggtatatcttaattttcttgccaaaatgtgaactatacataaaatccttttgtgacttggccaaagccttcct |
300 |
Q |
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| T |
14917944 |
tcctcacgtcttcattttggtgttaaa-gtatatcttaattttcttgccaaaatgtgaactatacataaaatccttttgtgacttggtcaaagccttcct |
14917846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 48 - 260
Target Start/End: Complemental strand, 19488737 - 19488525
Alignment:
| Q |
48 |
cacaaagagaacccaataaaccaacaccctcaatcctatcaatattgctcggaaatactctcctcaaatt-aagaatacagattttcttaatttctcgtt |
146 |
Q |
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| T |
19488737 |
cacaacgagaactcacaaaaccaacaccctcaatcatatcaatattgctc-gaaatactctcctcaaattaaagaaaacagattttctttttctctcgtt |
19488639 |
T |
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| Q |
147 |
actaatttttcannnnnnnnnncctaaagcaatcataaaaaacttcttgtatattcctcacgtcttcattttggtgttaaaggtatatcttaattttc-t |
245 |
Q |
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| T |
19488638 |
acttaacttttttttcttcttttctaaagcaaccataaaaaacttattgtatattccgcatgtctttattttggtgtcaaa-gtatatcctcattttctt |
19488540 |
T |
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| Q |
246 |
tgccaaaatgtgaac |
260 |
Q |
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| T |
19488539 |
tgccaaaatgtgaac |
19488525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 65 - 132
Target Start/End: Original strand, 48517813 - 48517877
Alignment:
| Q |
65 |
aaaccaacaccctcaatcctatcaatattgctcggaaatactctcctcaaattaagaatacagatttt |
132 |
Q |
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| T |
48517813 |
aaaccaacaccctcaattataccaatattgctcgg-aata--ctcctcaaattaagaaaacaaatttt |
48517877 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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