View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21290_low_9 (Length: 277)

Name: NF21290_low_9
Description: NF21290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21290_low_9
NF21290_low_9
[»] chr1 (3 HSPs)
chr1 (203-261)||(44193933-44193991)
chr1 (37-180)||(44307768-44307907)
chr1 (40-113)||(44314850-44314923)
[»] chr7 (2 HSPs)
chr7 (142-186)||(33049111-33049155)
chr7 (149-185)||(31742874-31742910)
[»] chr8 (1 HSPs)
chr8 (142-183)||(14867383-14867424)
[»] chr5 (1 HSPs)
chr5 (149-186)||(14355017-14355054)
[»] chr3 (3 HSPs)
chr3 (147-185)||(46475577-46475615)
chr3 (92-121)||(26537327-26537356)
chr3 (147-188)||(53527054-53527095)


Alignment Details
Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 203 - 261
Target Start/End: Original strand, 44193933 - 44193991
Alignment:
Q  203 tgtcatgaacaacgttttcttttcttttggtagtaacggtgttttgttgcggctgtgac 261  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  44193933 tgtcatgaacaacgttttcttttcttttggtagtaacggtgtttcgttgcggctgtgac 44193991  T

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Target: chr1; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 37 - 180
Target Start/End: Original strand, 44307768 - 44307907
Alignment:
Q  37 gttggtgtgaattacttacaacattacaccagtcttatgtaatgtataattgaagatagatttgaagttctaaactagagaaagagcgaatttaaaacat 136  Q
    |||||||||||||| |||||| ||||||||| | ||||||| ||||||||| |||||| |||||||||| ||||||| ||||| |||     ||||  |     
T  44307768 gttggtgtgaattaattacaatattacaccacttttatgtattgtataattaaagatatatttgaagttataaactaaagaaatagc----ctaaatgag 44307863  T
Q  137 atagttatgcactaaaaatgtgattttcatccatctcaattaaa 180  Q
    |||  |||  ||||||||||||||||||||||||| ||||||||    
T  44307864 ataaatatatactaaaaatgtgattttcatccatcccaattaaa 44307907  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 40 - 113
Target Start/End: Original strand, 44314850 - 44314923
Alignment:
Q  40 ggtgtgaattacttacaacattacaccagtcttatgtaatgtataattgaagatagatttgaagttctaaacta 113  Q
    ||||||||||| |||||| || ||| || | ||||||||| ||||| | |||||||||||||||||| ||||||    
T  44314850 ggtgtgaattaattacaatatcacatcacttttatgtaatctataactaaagatagatttgaagttcaaaacta 44314923  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 142 - 186
Target Start/End: Complemental strand, 33049155 - 33049111
Alignment:
Q  142 tatgcactaaaaatgtgattttcatccatctcaattaaaaaataa 186  Q
    |||| ||||||||||||||||||||||||||||||| ||||||||    
T  33049155 tatgtactaaaaatgtgattttcatccatctcaattgaaaaataa 33049111  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 185
Target Start/End: Complemental strand, 31742910 - 31742874
Alignment:
Q  149 taaaaatgtgattttcatccatctcaattaaaaaata 185  Q
    ||||||||||||||||||||||||||||| |||||||    
T  31742910 taaaaatgtgattttcatccatctcaattgaaaaata 31742874  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 142 - 183
Target Start/End: Original strand, 14867383 - 14867424
Alignment:
Q  142 tatgcactaaaaatgtgattttcatccatctcaattaaaaaa 183  Q
    |||| ||||||||||||||||||||||||||||||| |||||    
T  14867383 tatgtactaaaaatgtgattttcatccatctcaattgaaaaa 14867424  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 149 - 186
Target Start/End: Original strand, 14355017 - 14355054
Alignment:
Q  149 taaaaatgtgattttcatccatctcaattaaaaaataa 186  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  14355017 taaaaatgtgattttcatccatctcaattgaaaaataa 14355054  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 185
Target Start/End: Complemental strand, 46475615 - 46475577
Alignment:
Q  147 actaaaaatgtgattttcatccatctcaattaaaaaata 185  Q
    |||||||||||||||||||||||| |||||| |||||||    
T  46475615 actaaaaatgtgattttcatccatatcaattgaaaaata 46475577  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 92 - 121
Target Start/End: Original strand, 26537327 - 26537356
Alignment:
Q  92 atagatttgaagttctaaactagagaaaga 121  Q
    ||||||||||||||||||||||||||||||    
T  26537327 atagatttgaagttctaaactagagaaaga 26537356  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 147 - 188
Target Start/End: Complemental strand, 53527095 - 53527054
Alignment:
Q  147 actaaaaatgtgattttcatccatctcaattaaaaaataacg 188  Q
    ||||||||||| ||||||||||| ||||||| ||||||||||    
T  53527095 actaaaaatgtcattttcatccacctcaattgaaaaataacg 53527054  T

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