View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21291_high_4 (Length: 318)
Name: NF21291_high_4
Description: NF21291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21291_high_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 292; Significance: 1e-164; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 1 - 312
Target Start/End: Complemental strand, 39559265 - 39558954
Alignment:
| Q |
1 |
tgtacgaatcaccttacaaagtgacgtaaggattacatcctttgcttccaactcctctagaatgggacaaccagatagaagtttcaagatatagtcagaa |
100 |
Q |
| |
|
||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
39559265 |
tgtacgaataaccttacaaagtgccgtaaggattacatcctttgcttccaactcctctagaatgggacaaacagatagaagtttcaagatatagtcagaa |
39559166 |
T |
|
| Q |
101 |
tatgtgtaactgacagattttaagtgaagcacttttagcgagggaagatcgacgaaaggaacttcttcgttcaatgttaccctcttcaatttgaggacgg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
39559165 |
tatgtgtaactgacagattttaagtgaagcacttttagcgagggaagatcgacgaaaggaacttcttcattcaatgttaccctcttcaatttgaggacgg |
39559066 |
T |
|
| Q |
201 |
tcaaggttttgttagttagaactaaagaaggcaatgtggttttggatttatggcagagatcgatgcttaggttttcaactcctcgtgtcgtaatgattaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
39559065 |
tcaaggttttgttagttagaactaaagaaggcaatgtggttttggatttatggcagagatcgatgcttaggttttcaactcctcgtgttgtaatgattaa |
39558966 |
T |
|
| Q |
301 |
atcctttgcttc |
312 |
Q |
| |
|
|||||||||||| |
|
|
| T |
39558965 |
atcctttgcttc |
39558954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 26 - 284
Target Start/End: Complemental strand, 39558976 - 39558718
Alignment:
| Q |
26 |
gtaaggattacatcctttgcttccaactcctctagaatgggacaaccagatagaagtttcaagatatagtcagaatatgtgtaactgacagattttaagt |
125 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||||||||||||||| || ||||||||||||| ||| || ||| ||| || | ||| |||||||| ||||| |
|
|
| T |
39558976 |
gtaatgattaaatcctttgcttccaactcctctagaatgggacagccggatagaagtttcatgatgtactcataatgtgggaaaccgacagattctaagt |
39558877 |
T |
|
| Q |
126 |
gaagcacttttagcgagggaagatcgacgaaaggaacttcttcgttcaatgttaccctcttcaatttgaggacggtcaaggttttgttagttagaactaa |
225 |
Q |
| |
|
|||| ||||||||| ||||||||| |||||||||| |||||||||||||||| ||||||||||||||||| |||||||||||| |||||||||| || |
|
|
| T |
39558876 |
gaaggacttttagcaagggaagattaacgaaaggaa---cttcgttcaatgttacactcttcaatttgaggactgtcaaggttttggtagttagaaccaa |
39558780 |
T |
|
| Q |
226 |
agaaggcaatgtggttttggattta---tggcagagatcgatgcttaggttttcaactcctc |
284 |
Q |
| |
|
|| ||||| | || | | ||| ||| | |||||||| ||||||||||||||||||||||| |
|
|
| T |
39558779 |
agcaggcagtatgatatcggagttatacttgcagagattgatgcttaggttttcaactcctc |
39558718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 41 - 283
Target Start/End: Complemental strand, 50814561 - 50814322
Alignment:
| Q |
41 |
tttgcttccaactcctctagaatgggacaaccagatagaagtttcaagatatagtcagaatatgtgtaactgacagattttaagtgaagcacttttagcg |
140 |
Q |
| |
|
||||||||||||| ||||||||||||||||| |||||||||||||| | || |||| | ||||| || ||||||||| ||||||||| |||||||| | |
|
|
| T |
50814561 |
tttgcttccaacttctctagaatgggacaactagatagaagtttcatcaagtactcaggacatgtgaaagtgacagattctaagtgaaggacttttagtg |
50814462 |
T |
|
| Q |
141 |
agggaagatcgacgaaaggaacttcttcgttcaatgttaccctcttcaatttgaggacggtcaaggttttgttagttagaactaaagaaggcaatgtggt |
240 |
Q |
| |
|
|||||||||| |||||||||||||| |||||||||||||||||||||||||||| |||||||||||| ||||||||| |||||||||| |||||| |
|
|
| T |
50814461 |
agggaagatcaacgaaaggaacttc---gttcaatgttaccctcttcaatttgagggatgtcaaggttttgctagttagaatgaaagaaggcagtgtggt |
50814365 |
T |
|
| Q |
241 |
tttggatttatggcagagatcgatgcttaggttttcaactcct |
283 |
Q |
| |
|
|| | ||||||||||| ||||||||||||||||||||| |
|
|
| T |
50814364 |
ttcgttaagatggcagagatttatgcttaggttttcaactcct |
50814322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 41 - 283
Target Start/End: Original strand, 50861303 - 50861542
Alignment:
| Q |
41 |
tttgcttccaactcctctagaatgggacaaccagatagaagtttcaagatatagtcagaatatgtgtaactgacagattttaagtgaagcacttttagcg |
140 |
Q |
| |
|
||||||||||||| ||||||||||||||||| |||||||||||||| | || |||| | ||||| || ||||||||| ||||||||| |||||||| | |
|
|
| T |
50861303 |
tttgcttccaacttctctagaatgggacaactagatagaagtttcatcaagtactcaggacatgtgaaagtgacagattctaagtgaaggacttttagtg |
50861402 |
T |
|
| Q |
141 |
agggaagatcgacgaaaggaacttcttcgttcaatgttaccctcttcaatttgaggacggtcaaggttttgttagttagaactaaagaaggcaatgtggt |
240 |
Q |
| |
|
|||||||||| |||||||||||||| |||||||||||||||||||||||||||| |||||||||||| ||||||||| |||||||||| |||||| |
|
|
| T |
50861403 |
agggaagatcaacgaaaggaacttc---gttcaatgttaccctcttcaatttgagggatgtcaaggttttgctagttagaatgaaagaaggcagtgtggt |
50861499 |
T |
|
| Q |
241 |
tttggatttatggcagagatcgatgcttaggttttcaactcct |
283 |
Q |
| |
|
|| | ||||||||||| ||||||||||||||||||||| |
|
|
| T |
50861500 |
ttcgttaagatggcagagatttatgcttaggttttcaactcct |
50861542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 50814874 - 50814636
Alignment:
| Q |
1 |
tgtacgaatcaccttacaaagtgacgtaaggattacatcctttgcttccaactcctctagaatgggacaaccagatagaagtttcaagatatagtcagaa |
100 |
Q |
| |
|
||||||||||||| ||||| || ||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| || ||| || | || |
|
|
| T |
50814874 |
tgtacgaatcaccatacaacgtctcgtaactattacatcctttgcttccaactcctctagaacgggacaaccagatagaagtgtcgtgatgtaccaataa |
50814775 |
T |
|
| Q |
101 |
tatgtgtaactgacagattttaagtgaagcacttttagcgagggaagatcgacgaaaggaacttcttcgttcaatgttaccctcttcaatttgaggacgg |
200 |
Q |
| |
|
|||||| |||||||||||| ||||||||| ||||||||| |||||||||| |||||||||| ||| ||||||||||| ||||||||||||||| || |
|
|
| T |
50814774 |
tatgtgaaactgacagattctaagtgaaggacttttagcaagggaagatcaacgaaaggaa---cttggttcaatgttatcctcttcaatttgagttggg |
50814678 |
T |
|
| Q |
201 |
tcaaggttttgttagttagaactaaagaaggcaatgtggttt |
242 |
Q |
| |
|
||| ||||||| ||||||| | |||||||||| | |||||| |
|
|
| T |
50814677 |
tcagggttttggtagttaggatgaaagaaggcagtatggttt |
50814636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 50860990 - 50861228
Alignment:
| Q |
1 |
tgtacgaatcaccttacaaagtgacgtaaggattacatcctttgcttccaactcctctagaatgggacaaccagatagaagtttcaagatatagtcagaa |
100 |
Q |
| |
|
||||||||||||| ||||| || ||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| || ||| || | || |
|
|
| T |
50860990 |
tgtacgaatcaccatacaacgtctcgtaactattacatcctttgcttccaactcctctagaacgggacaaccagatagaagtgtcgtgatgtaccaataa |
50861089 |
T |
|
| Q |
101 |
tatgtgtaactgacagattttaagtgaagcacttttagcgagggaagatcgacgaaaggaacttcttcgttcaatgttaccctcttcaatttgaggacgg |
200 |
Q |
| |
|
|||||| |||||||||||| ||||||||| ||||||||| |||||||||| |||||||||| ||| ||||||||||| ||||||||||||||| || |
|
|
| T |
50861090 |
tatgtgaaactgacagattctaagtgaaggacttttagcaagggaagatcaacgaaaggaa---cttggttcaatgttatcctcttcaatttgagttggg |
50861186 |
T |
|
| Q |
201 |
tcaaggttttgttagttagaactaaagaaggcaatgtggttt |
242 |
Q |
| |
|
||| ||||||| ||||||| | |||||||||| | |||||| |
|
|
| T |
50861187 |
tcagggttttggtagttaggatgaaagaaggcagtatggttt |
50861228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 41 - 198
Target Start/End: Original strand, 49857434 - 49857591
Alignment:
| Q |
41 |
tttgcttccaactcctctagaatgggacaaccagatagaagtttcaagatatagtcagaatatgtgtaactgacagattttaagtgaagcacttttagcg |
140 |
Q |
| |
|
|||||||||||||| | |||||||||||| ||||||| |||||| ||||| || |||||||| ||| ||| |||| |||||||| | ||| |||| |
|
|
| T |
49857434 |
tttgcttccaactcttgtagaatgggacatccagataaaagttttctgatatgtccataatatgtgaaacagacggattccaagtgaaggattttgagcg |
49857533 |
T |
|
| Q |
141 |
agggaagatcgacgaaaggaacttcttcgttcaatgttaccctcttcaatttgaggac |
198 |
Q |
| |
|
| |||||||| || |||||| |||| | ||||||||||| |||||||||||||||||| |
|
|
| T |
49857534 |
acggaagatcaaccaaaggaccttcatagttcaatgttatcctcttcaatttgaggac |
49857591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 200 - 284
Target Start/End: Original strand, 49868709 - 49868793
Alignment:
| Q |
200 |
gtcaaggttttgttagttagaactaaagaaggcaatgtggttttggatttatggcagagatcgatgcttaggttttcaactcctc |
284 |
Q |
| |
|
|||||||||||| |||| ||||| |||| ||||||||| |||||||| | | |||||||||||||| ||||||||| |||||||| |
|
|
| T |
49868709 |
gtcaaggttttggtagtaagaacgaaagtaggcaatgtagttttggagtaaaggcagagatcgatggttaggtttttaactcctc |
49868793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 79 - 198
Target Start/End: Original strand, 49760622 - 49760738
Alignment:
| Q |
79 |
aagtttcaagatatagtcagaatatgtgtaactgacagattttaagtgaagcacttttagcgagggaagatcgacgaaaggaacttcttcgttcaatgtt |
178 |
Q |
| |
|
||||||||||||||| ||| ||||||||||| ||||| || |||||||| |||| ||||| |||||||| ||| | |||| || | |||||||| |
|
|
| T |
49760622 |
aagtttcaagatatattcataatatgtgtaagtgacaagttccaagtgaagggctttgagcgaaggaagatcaacgtacggaa---ctccagtcaatgtt |
49760718 |
T |
|
| Q |
179 |
accctcttcaatttgaggac |
198 |
Q |
| |
|
| |||||||||||||||||| |
|
|
| T |
49760719 |
atcctcttcaatttgaggac |
49760738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 231
Target Start/End: Complemental strand, 31211027 - 31210971
Alignment:
| Q |
175 |
tgttaccctcttcaatttgaggacggtcaaggttttgttagttagaactaaagaagg |
231 |
Q |
| |
|
|||||| |||||||||||||||| |||||||||||| || ||||||| |||||||| |
|
|
| T |
31211027 |
tgttacgctcttcaatttgaggaatgtcaaggttttggtatttagaaccaaagaagg |
31210971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University