View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21291_low_2 (Length: 434)
Name: NF21291_low_2
Description: NF21291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21291_low_2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 396; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 19 - 422
Target Start/End: Original strand, 40531763 - 40532166
Alignment:
| Q |
19 |
caaatacaaacgcaattcttggtaaacaatttgaagatgtgaaacaaatttacacacttgggaaagaattaggaagaggacaatttggtgtgacttatct |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40531763 |
caaatacaaacgcaattcttggtaaacaatttgaagatgtgaaacaaatttacacacttgggaaagaattaggaagaggacaatttggtgtgacttatct |
40531862 |
T |
|
| Q |
119 |
ttgtactgagaattcaactggattgaaatatgcttgcaaatcaatttccaagaggaaacttgttagtaaatctgataaagaagatataaagagggagatt |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40531863 |
ttgtactgagaattcaactggattgaaatatgcttgcaaatcaatttccaagaggaaacttgttagtaaatctgataaagaagatataaagagggagatt |
40531962 |
T |
|
| Q |
219 |
caaatcatgcaacatatgagtggacaaccaaatattgttgagtttaaaggtgcttatgaggataaaaattcagttcatgttgtaatggaactttgtgctg |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40531963 |
caaatcatgcaacatatgagtggacaaccaaatattgttgagtttaaaggtgcttatgaggataaaaattcagttcatgttgtaatggaactttgtgctg |
40532062 |
T |
|
| Q |
319 |
gtggtgaactttttgacaggattattgccaagggaaagtatagtgaaagagctgccgcttcaatttgtagacaaattgttaatgttgttcatatttgtca |
418 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40532063 |
gtggtgaactttttgacaggattattgctaagggaaagtatagtgaaagagctgcagcttcaatttgtagacaaattgttaatgttgttcatatttgtca |
40532162 |
T |
|
| Q |
419 |
tttt |
422 |
Q |
| |
|
|||| |
|
|
| T |
40532163 |
tttt |
40532166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 22 - 422
Target Start/End: Original strand, 40536731 - 40537131
Alignment:
| Q |
22 |
atacaaacgcaattcttggtaaacaatttgaagatgtgaaacaaatttacacacttgggaaagaattaggaagaggacaatttggtgtgacttatctttg |
121 |
Q |
| |
|
|||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |
|
|
| T |
40536731 |
atacaaacacaattccaggtaaacaatttgaagatgtgaaacaaatttacacacttgggaaagaattaggaagaggacaatttggcgtgacttacctttg |
40536830 |
T |
|
| Q |
122 |
tactgagaattcaactggattgaaatatgcttgcaaatcaatttccaagaggaaacttgttagtaaatctgataaagaagatataaagagggagattcaa |
221 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| || ||||||| ||||| |||||||||||||||||| |
|
|
| T |
40536831 |
tactgagaattcaactggattgaaatatgcttgcaaatcaatttctaagaggaatcttgttagtgaacctgataaggaagaaataaagagggagattcaa |
40536930 |
T |
|
| Q |
222 |
atcatgcaacatatgagtggacaaccaaatattgttgagtttaaaggtgcttatgaggataaaaattcagttcatgttgtaatggaactttgtgctggtg |
321 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
40536931 |
atcatgcagcatatgagtggacaaccaaatattgttgagtttaaaggtgcttatgaggatgaaaattcagttcatgttgttatggaactttgtgctggtg |
40537030 |
T |
|
| Q |
322 |
gtgaactttttgacaggattattgccaagggaaagtatagtgaaagagctgccgcttcaatttgtagacaaattgttaatgttgttcatatttgtcattt |
421 |
Q |
| |
|
||||||||| ||| | |||||||||||| || || ||||||||||||| ||| |||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
40537031 |
gtgaactttatgatacgattattgccaaagggaaatatagtgaaagagatgcagcttcaatttttagacaaattgttaatgttgttcatatttgtcattt |
40537130 |
T |
|
| Q |
422 |
t |
422 |
Q |
| |
|
| |
|
|
| T |
40537131 |
t |
40537131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 252 - 343
Target Start/End: Original strand, 2478709 - 2478800
Alignment:
| Q |
252 |
attgttgagtttaaaggtgcttatgaggataaaaattcagttcatgttgtaatggaactttgtgctggtggtgaactttttgacaggattat |
343 |
Q |
| |
|
||||||||| |||||||||||||||||||| |||| ||| || || | ||||| ||||||||||||||||| |||||||| |||||||| |
|
|
| T |
2478709 |
attgttgagcttaaaggtgcttatgaggatcgtcattcggttaatcttatcatggagctttgtgctggtggtgagctttttgataggattat |
2478800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 51 - 422
Target Start/End: Original strand, 20501115 - 20501486
Alignment:
| Q |
51 |
gaagatgtgaaacaaatttacacacttgggaaagaattaggaagaggacaatttggtgtgacttatctttgtactgagaattcaactggattgaaatatg |
150 |
Q |
| |
|
||||||||||||||| | |||||||| || ||||||||||| ||||| ||||| || || || | ||| || || |||||||||||||||||| |||| |
|
|
| T |
20501115 |
gaagatgtgaaacaattctacacactaggtaaagaattaggtagaggccaattcggagtaacgtttctatgcaccgagaattcaactggattgctttatg |
20501214 |
T |
|
| Q |
151 |
cttgcaaatcaatttccaagaggaaacttgttagtaaatctgataaagaagatataaagagggagattcaaatcatgcaacatatgagtggacaaccaaa |
250 |
Q |
| |
|
||||||| ||||||||||||||||||||||| ||||||||||||| |||||||||||||| |||||||| |||||||||||| ||||||| |||||||| |
|
|
| T |
20501215 |
cttgcaagtcaatttccaagaggaaacttgtgagtaaatctgatagggaagatataaagagagagattcagatcatgcaacatttgagtggtcaaccaaa |
20501314 |
T |
|
| Q |
251 |
tattgttgagtttaaaggtgcttatgaggataaaaattcagttcatgttgtaatggaactttgtgctggtggtgaactttttgacaggattattgccaag |
350 |
Q |
| |
|
||||||||| |||||||| ||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||| || |
|
|
| T |
20501315 |
tattgttgaatttaaaggagcttatgaggataggaattcagttcatgttgttatggaactttgtgctggtggtgaactttttgataggatcattgctaaa |
20501414 |
T |
|
| Q |
351 |
ggaaagtatagtgaaagagctgccgcttcaatttgtagacaaattgttaatgttgttcatatttgtcatttt |
422 |
Q |
| |
|
||| | |||||||||| |||||| ||||| ||||||||||| ||||||||||||||| |||||||||||||| |
|
|
| T |
20501415 |
ggacattatagtgaaaaagctgctgcttctatttgtagacagattgttaatgttgttaatatttgtcatttt |
20501486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 86; Significance: 6e-41; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 19 - 116
Target Start/End: Original strand, 19430770 - 19430867
Alignment:
| Q |
19 |
caaatacaaacgcaattcttggtaaacaatttgaagatgtgaaacaaatttacacacttgggaaagaattaggaagaggacaatttggtgtgacttat |
116 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
19430770 |
caaatacaaaaacaattcttggtaaacaatttgaagatgtgaaacaaatttacacacttgggaaagaattaggaagagggcaatttggtgtgacttat |
19430867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 19 - 118
Target Start/End: Original strand, 19149712 - 19149811
Alignment:
| Q |
19 |
caaatacaaacgcaattcttggtaaacaatttgaagatgtgaaacaaatttacacacttgggaaagaattaggaagaggacaatttggtgtgacttatct |
118 |
Q |
| |
|
||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
19149712 |
caaatacaaacacaattcttagtaaataatttgaagatgtgaaacaaatttacacagttgggaaagaattaggaagagggcaatttggtgtgacttatct |
19149811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 81 - 346
Target Start/End: Original strand, 55167936 - 55168201
Alignment:
| Q |
81 |
aaagaattaggaagaggacaatttggtgtgacttatctttgtactgagaattcaactggattgaaatatgcttgcaaatcaatttccaagaggaaacttg |
180 |
Q |
| |
|
||||||||||| |||| |||||||| | |||||| |||||||||||||||| || || || || || || || ||||| || | ||||| || |||| |
|
|
| T |
55167936 |
aaagaattaggtcgaggccaatttgggattacttatttttgtactgagaattccaccggtttaaattacgcgtgtaaatctatattaaagagaaagcttg |
55168035 |
T |
|
| Q |
181 |
ttagtaaatctgataaagaagatataaagagggagattcaaatcatgcaacatatgagtggacaaccaaatattgttgagtttaaaggtgcttatgagga |
280 |
Q |
| |
|
| ||| |||||| ||||||||| || || |||||||| || |||||||| | || ||||| ||||||||||||||||||||||||| |||||| |
|
|
| T |
55168036 |
tgtcaaaagctgatagagaagatattaaaagagagattcagattctgcaacatttatcaggtcaaccgaatattgttgagtttaaaggtgcttttgagga |
55168135 |
T |
|
| Q |
281 |
taaaaattcagttcatgttgtaatggaactttgtgctggtggtgaactttttgacaggattattgc |
346 |
Q |
| |
|
|| | || || ||| |||| ||||||||||||||||||||||| | ||||| ||||||||||| |
|
|
| T |
55168136 |
tagattctctgtgcatcttgtgatggaactttgtgctggtggtgagttgtttgataggattattgc |
55168201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 264 - 344
Target Start/End: Complemental strand, 41623194 - 41623114
Alignment:
| Q |
264 |
aaaggtgcttatgaggataaaaattcagttcatgttgtaatggaactttgtgctggtggtgaactttttgacaggattatt |
344 |
Q |
| |
|
||||||||||||||||||||| | || ||| | |||| ||||| |||||||||||||||||||||||||| |||||||| |
|
|
| T |
41623194 |
aaaggtgcttatgaggataaacactctgttaaccttgttatggagctttgtgctggtggtgaactttttgatcggattatt |
41623114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 237 - 282
Target Start/End: Original strand, 8404801 - 8404846
Alignment:
| Q |
237 |
agtggacaaccaaatattgttgagtttaaaggtgcttatgaggata |
282 |
Q |
| |
|
|||||||||||||| || |||||||| || |||||||||||||||| |
|
|
| T |
8404801 |
agtggacaaccaaacatagttgagttcaagggtgcttatgaggata |
8404846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University